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NC_031231.1__YP_009301316.1__BJD78_gp59__00059

Bact-Vir

NC_031231.1__YP_009301316.1__BJD78_gp59__00059

Identity

Accession:
NC_031231 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kelleziovirus› Arthrobacter_phage_KellEzio

TaxID: 1796995

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-97
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 44.0 3.98e-01 85.5% 47.7%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.65 37.0 3.01e-01 85.5% 28.8%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 39.0 3.61e-01 84.2% 46.5%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 38.0 3.62e-01 82.9% 49.4%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 42.0 3.81e-01 85.5% 49.5%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 40.0 3.71e-01 85.5% 50.0%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 41.0 3.75e-01 85.5% 50.5%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 39.0 3.48e-01 84.2% 45.8%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 37.0 3.44e-01 84.2% 47.5%
3mjkA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.59 48.0 3.96e-01 100.0% 51.2%
1nbwA02 3.90.470.30 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain 0.58 50.0 4.14e-01 100.0% 84.6%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 40.0 3.64e-01 84.2% 54.4%
2fgeA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.54 44.0 3.16e-01 93.4% 71.6%
6zzmA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 40.0 2.95e-01 82.9% 75.0%
6mroA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 45.0 3.33e-01 93.4% 93.3%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 42.0 4.03e-01 88.2% 87.8%
4necC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 45.0 3.35e-01 98.7% 89.5%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.52 41.0 2.94e-01 92.1% 90.1%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.30e-01 82.9% 47.7%
1jpyX00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.52 41.0 3.63e-01 96.1% 57.3%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.39e-01 85.5% 67.9%
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.36e-01 100.0% 90.1%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.51 43.0 3.96e-01 100.0% 70.9%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 31.0 2.97e-01 88.2% 48.9%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 41.0 3.24e-01 92.1% 98.2%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.50 40.0 3.85e-01 86.8% 89.5%
2znhA03 6.20.40.10 Special › Other non-globular › Porin MspA ribbon fold › 0.50 29.0 3.34e-01 71.1% 89.4%
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.50 32.0 3.15e-01 84.2% 59.3%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4351239 4967.1.1.6 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.71 35.0 2.94e-01 71.1% 27.7%
4937786 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.65 42.0 3.85e-01 84.2% 50.0%
3495127 11.12.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.65 47.0 3.24e-01 77.6% 72.7%
4957224 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.63 41.0 3.81e-01 85.5% 51.0%
5040667 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.63 41.0 3.74e-01 85.5% 49.5%
4928840 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.62 39.0 3.58e-01 84.2% 48.0%
5038160 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.62 41.0 3.76e-01 85.5% 51.0%
4618987 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 44.0 3.72e-01 86.8% 47.2%
4945568 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 47.0 3.85e-01 86.8% 48.3%
4803119 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.60 38.0 3.52e-01 85.5% 48.1%
3711494 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.58 45.0 4.15e-01 84.2% 65.3%
4972140 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 46.0 3.74e-01 88.2% 46.7%
3740450 328.1.1.3 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.58 46.0 4.40e-01 86.8% 88.9%
3954749 304.51.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.58 45.0 3.30e-01 84.2% 69.8%
4027772 213.1.1.10 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Leu_Phe_trans 0.57 49.0 3.42e-01 100.0% 32.9%
4940944 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.57 43.0 3.67e-01 88.2% 49.6%
4933755 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 40.0 3.47e-01 88.2% 47.2%
3474068 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.55 48.0 3.42e-01 98.7% 88.3%
4629521 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.55 36.0 3.36e-01 85.5% 50.0%
5006840 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.55 43.0 3.59e-01 84.2% 64.3%
4396101 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.55 43.0 2.69e-01 85.5% 50.9%
4018634 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 42.0 3.70e-01 85.5% 77.4%
5030500 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 42.0 3.48e-01 86.8% 47.1%
5022277 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 41.0 3.53e-01 86.8% 50.0%
4140821 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.53 36.0 3.31e-01 84.2% 51.4%
4666185 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 42.0 2.64e-01 85.5% 48.0%
327528 328.1.1.2 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › SpoVS 0.53 42.0 4.03e-01 88.2% 87.8%
3665260 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 38.0 2.73e-01 85.5% 25.8%
5015958 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.52 35.0 3.20e-01 84.2% 50.0%
9346 2003.1.5.179 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.52 43.0 3.41e-01 98.7% 91.9%
4538250 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.52 40.0 3.39e-01 86.8% 48.1%
3733648 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 2.97e-01 82.9% 33.8%
3552097 11.1.1.242 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RET_CLD3 0.52 44.0 3.77e-01 100.0% 66.7%
3603739 101.1.1.498 ↗ alpha arrays › HTH › HTH › Three-helical HTH › LAGLIDADG_3 0.52 39.0 2.58e-01 88.2% 19.1%
3255418 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.52 35.0 2.31e-01 78.9% 14.3%
3225904 7084.1.1.1 ↗ few secondary structure elements › Highly disulfide-linked beta sandwich region of p43 › Highly disulfide-linked beta sandwich region of p43 › Highly disulfide-linked beta sandwich region of p43 › PF28734 0.51 41.0 3.81e-01 85.5% 81.1%
4635290 4967.1.1.25 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.51 40.0 2.54e-01 85.5% 48.1%
3517061 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.51 46.0 3.39e-01 100.0% 95.4%
4944847 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.51 34.0 3.15e-01 85.5% 51.0%
3947630 2484.1.1.56 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDR 0.51 38.0 2.53e-01 88.2% 94.4%
4276635 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.51 38.0 3.56e-01 82.9% 71.0%
347023 2003.1.5.179 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 0.50 42.0 3.29e-01 100.0% 90.1%
D2 high residues 98-227
PDB
Domain cluster: rep: MH992131.1__QAY18132.1__X__00039__D8-122
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.65 49.0 5.07e-01 79.2% 84.0%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.65 40.0 4.30e-01 79.2% 72.5%
1vp2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.63 48.0 4.24e-01 79.2% 88.9%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 35.0 3.71e-01 78.5% 60.2%
1b78A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.62 47.0 4.16e-01 78.5% 90.2%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 39.0 3.91e-01 78.5% 62.4%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.60 45.0 4.19e-01 79.2% 65.1%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 38.0 3.84e-01 79.2% 62.6%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 36.0 3.65e-01 79.2% 59.0%
4oo0B00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.59 44.0 3.86e-01 79.2% 88.7%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 37.0 3.79e-01 77.7% 64.8%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 38.0 3.84e-01 79.2% 64.4%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.58 44.0 3.87e-01 79.2% 90.8%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 34.0 3.53e-01 78.5% 61.0%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 36.0 3.59e-01 78.5% 59.4%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.58 40.0 3.91e-01 77.7% 64.6%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.57 36.0 3.86e-01 72.3% 71.6%
4jhcB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.57 43.0 3.87e-01 79.2% 87.9%
1ex2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.57 42.0 3.84e-01 79.2% 91.4%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.65e-01 96.2% 54.0%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.56 39.0 3.86e-01 78.5% 66.7%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 35.0 3.59e-01 79.2% 63.3%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 33.0 3.42e-01 77.7% 60.0%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.70e-01 77.7% 61.4%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 32.0 3.30e-01 76.9% 59.2%
1nu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 3.50e-01 81.5% 60.7%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.53e-01 80.0% 62.9%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.53 41.0 3.78e-01 83.1% 79.9%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.65e-01 86.9% 64.9%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 34.0 3.44e-01 79.2% 64.1%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 3.50e-01 83.1% 65.2%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.53e-01 80.8% 64.9%
1rh8A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 38.0 3.69e-01 78.5% 93.7%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.50 36.0 3.39e-01 88.5% 59.5%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 32.0 3.28e-01 80.0% 63.1%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.50 37.0 3.42e-01 86.2% 59.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3861891 330.1.1.26 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_RDM1 0.70 55.0 5.42e-01 80.0% 80.0%
3284315 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.70 41.0 4.22e-01 78.5% 60.0%
3838085 7503.1.1.11 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › HP1454-like_C 0.69 43.0 4.83e-01 80.8% 81.0%
3628642 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 38.0 2.70e-01 76.9% 18.9%
3613822 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 41.0 2.83e-01 77.7% 18.5%
4402449 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.65 49.0 4.21e-01 79.2% 86.3%
None — 0.65 49.0 4.39e-01 79.2% 90.0%
3881865 330.1.1.26 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_RDM1 0.64 49.0 5.11e-01 80.0% 88.3%
4947058 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.64 48.0 4.31e-01 79.2% 89.7%
None — 0.63 48.0 4.14e-01 79.2% 91.0%
5026656 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.63 48.0 4.18e-01 79.2% 85.6%
3724634 243.1.1.63 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 0.63 41.0 4.05e-01 78.5% 60.7%
4991968 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.62 41.0 4.48e-01 76.2% 79.1%
4424316 7503.1.1.2 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › ABC_trans_aux 0.62 48.0 4.45e-01 80.8% 94.5%
3088557 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.62 48.0 4.36e-01 80.8% 75.6%
4588443 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.62 47.0 4.09e-01 79.2% 88.4%
3254046 243.1.1.9 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF1348 0.62 37.0 3.50e-01 78.5% 48.7%
4164014 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.62 47.0 3.97e-01 79.2% 88.7%
3681285 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.61 42.0 3.65e-01 70.0% 63.0%
3289451 243.1.1.63 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 0.61 41.0 4.04e-01 80.0% 62.9%
4425733 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.61 47.0 4.04e-01 79.2% 88.5%
3962300 7504.1.1.0 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like 0.60 46.0 4.05e-01 80.0% 93.5%
4373837 243.1.1.6 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.59 40.0 3.96e-01 77.7% 65.0%
3957821 243.1.1.77 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.58 37.0 3.79e-01 77.7% 64.1%
3271321 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 34.0 3.36e-01 77.7% 53.3%
4679976 7504.1.1.3 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf 0.58 43.0 3.94e-01 79.2% 91.7%
5046303 7504.1.1.1 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.58 44.0 3.91e-01 79.2% 87.8%
3591282 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 35.0 3.67e-01 78.5% 65.5%
4173092 222.2.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins 0.57 36.0 3.97e-01 73.1% 78.1%
4332226 7504.1.1.3 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf 0.57 43.0 3.81e-01 79.2% 87.2%
5073316 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 43.0 3.23e-01 80.8% 38.8%
3961892 243.1.1.77 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.56 37.0 3.66e-01 86.9% 62.1%
3287863 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 36.0 3.69e-01 79.2% 65.4%
1146698 243.1.1.6 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.56 39.0 3.87e-01 78.5% 67.1%
3262201 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 42.0 4.05e-01 88.5% 71.0%
3826602 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.55 34.0 3.33e-01 76.9% 56.4%
3287916 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 35.0 3.58e-01 80.0% 65.4%
5001466 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.54 40.0 2.97e-01 77.7% 32.5%
1064199 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 33.0 3.41e-01 79.2% 66.9%
3221148 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.52 42.0 2.91e-01 87.7% 28.2%
3521640 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.51 34.0 3.58e-01 78.5% 74.8%
3423296 7026.1.1.0 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.51 40.0 3.24e-01 83.8% 82.2%
3843921 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.51 33.0 3.44e-01 78.5% 68.8%
3660552 243.3.1.12 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.50 29.0 3.24e-01 76.2% 72.0%
D3 high residues 244-323
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 46.0 5.34e-01 86.3% 85.5%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 47.0 5.39e-01 91.3% 87.9%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 55.0 4.85e-01 91.3% 80.2%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.65 37.0 3.47e-01 80.0% 46.4%
3hjlA03 1.20.5.2020 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 29.0 3.92e-01 75.0% 82.9%
2qe9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.63 57.0 4.55e-01 100.0% 87.3%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 45.0 4.52e-01 95.0% 75.3%
2qrjA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 41.0 3.13e-01 100.0% 28.3%
3o10C00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.62 56.0 4.68e-01 100.0% 83.1%
3um7A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 38.0 3.54e-01 100.0% 49.5%
3cexA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.61 54.0 4.25e-01 100.0% 48.8%
4at7B01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.60 45.0 3.79e-01 78.8% 88.7%
5o5cB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 50.0 4.33e-01 93.8% 71.9%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 54.0 4.92e-01 97.5% 83.5%
7x4eA01 1.10.1220.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE 0.59 50.0 4.60e-01 95.0% 97.2%
2p9xA00 1.10.1200.200 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 0.59 42.0 4.00e-01 76.2% 80.6%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 50.0 3.83e-01 93.8% 52.5%
3cnlA02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.59 44.0 4.29e-01 96.2% 72.5%
1werA01 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.59 42.0 3.27e-01 75.0% 92.6%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.58 36.0 3.31e-01 80.0% 48.0%
1e6dM01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.58 40.0 3.27e-01 71.2% 50.3%
1wmwB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 41.0 2.79e-01 76.2% 54.9%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 45.0 3.34e-01 85.0% 81.3%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 45.0 3.81e-01 90.0% 65.5%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 46.0 4.75e-01 93.8% 97.3%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.55 35.0 2.77e-01 95.0% 30.3%
2d9jA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.55 38.0 3.83e-01 72.5% 91.1%
2ejeA00 3.90.1460.10 Alpha Beta › Alpha-Beta Complex › GTF2I-like repeat › GTF2I-like 0.54 45.0 4.04e-01 93.8% 64.0%
2dlaA01 1.20.930.50 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.54 41.0 3.28e-01 82.5% 41.9%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.53 40.0 4.37e-01 82.5% 97.0%
4lrjA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 41.0 4.01e-01 81.2% 83.9%
1l8sA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.53 46.0 4.03e-01 97.5% 90.3%
4fxxB01 6.10.140.1790 Special › Helix non-globular › Helix Hairpins › 0.53 35.0 3.73e-01 80.0% 76.4%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.53 39.0 4.05e-01 96.2% 87.5%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.52 35.0 4.10e-01 92.5% 98.2%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.52 41.0 3.72e-01 92.5% 98.3%
2kzcA00 1.10.790.20 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Domain of unknown function DUF1476 0.51 37.0 3.72e-01 77.5% 89.4%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.51 43.0 3.17e-01 100.0% 34.7%
3vx4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.15e-01 96.2% 42.7%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 35.0 2.96e-01 70.0% 65.4%
4hv0C00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.51 42.0 4.09e-01 93.8% 100.0%
3a7mA01 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.51 46.0 4.10e-01 100.0% 70.0%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 40.0 3.35e-01 88.7% 85.9%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3425736 3525.1.1.1 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.69 56.0 5.31e-01 100.0% 74.7%
3456656 3525.1.1.1 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.68 50.0 5.35e-01 91.3% 95.4%
4021842 109.4.1.1553 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28151 0.68 37.0 2.07e-01 80.0% 4.7%
3273218 633.24.1.2 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.68 40.0 3.78e-01 82.5% 49.5%
5001365 4271.1.1.0 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like 0.64 51.0 3.84e-01 100.0% 35.9%
5031304 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.61 55.0 4.60e-01 100.0% 83.7%
4955187 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.61 55.0 4.58e-01 100.0% 82.2%
5074981 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.60 53.0 4.39e-01 98.8% 90.3%
4187835 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 51.0 4.59e-01 93.8% 89.1%
3503229 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.60 48.0 4.38e-01 86.3% 88.6%
3924462 632.1.1.11 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › HYOU1_C 0.60 54.0 4.71e-01 100.0% 73.3%
4295850 5059.1.1.9 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Sugar_transport 0.58 45.0 3.08e-01 82.5% 98.6%
4649054 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.58 49.0 4.62e-01 95.0% 88.9%
3744005 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 42.0 3.21e-01 76.2% 60.5%
4927414 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.58 45.0 3.03e-01 82.5% 65.4%
3291160 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.54 42.0 3.05e-01 83.7% 71.6%
3440919 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.54 42.0 3.91e-01 83.7% 82.0%
5024611 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.54 40.0 2.77e-01 80.0% 99.3%
5019671 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.53 39.0 2.83e-01 80.0% 96.5%
4940192 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 38.0 3.32e-01 80.0% 52.6%
3394397 109.4.1.120 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 0.52 41.0 2.43e-01 85.0% 20.0%
4965262 141.1.1.3 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA 0.52 46.0 3.14e-01 100.0% 96.4%
5036014 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 38.0 3.56e-01 80.0% 64.2%
4028685 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 38.0 3.41e-01 80.0% 57.3%
3009971 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 36.0 3.55e-01 80.0% 68.2%
4995939 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.51 34.0 3.18e-01 70.0% 57.1%
3392975 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 39.0 2.50e-01 100.0% 18.1%
4494826 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.51 36.0 3.68e-01 75.0% 100.0%
4214015 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.51 39.0 3.58e-01 85.0% 65.5%
3244401 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 36.0 3.11e-01 82.5% 51.3%
3808578 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 37.0 3.84e-01 83.7% 82.4%
3680927 3542.1.1.3 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.50 44.0 2.97e-01 100.0% 27.4%
4931441 604.39.1.1 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › CbiM 0.50 41.0 3.10e-01 91.3% 42.5%