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NC_031234.1__YP_009301468.1__BJD66_gp27__00027

Bact-Vir

NC_031234.1__YP_009301468.1__BJD66_gp27__00027

Identity

Accession:
NC_031234 ↗
Kingdom:
phage

Quality

95.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Emalynvirus› Gordonia_phage_Emalyn

TaxID: 1821552

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-69_118-149_195-212
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pgsA02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.49e-01 98.8% 92.6%
6f2sH01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 3.97e-01 98.8% 82.8%
5hbaA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 4.39e-01 100.0% 99.2%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.56 47.0 4.11e-01 97.7% 99.3%
3s7vC00 2.60.175.10 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus 0.56 48.0 3.48e-01 98.8% 92.2%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.55 47.0 3.74e-01 97.7% 74.7%
3k94A00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.54 48.0 3.51e-01 100.0% 38.3%
1m06G00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.48e-01 94.2% 72.7%
2hb0A01 2.60.40.2520 Mainly Beta › Sandwich › Immunoglobulin-like › CFA/I fimbrial subunit E, adhesin domain 0.52 37.0 3.06e-01 76.7% 40.1%
5lxvA01 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.56e-01 98.8% 91.7%
4aw7A03 2.60.120.1200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.92e-01 98.8% 98.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979173 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 49.0 4.68e-01 100.0% 98.1%
5022362 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 32.0 2.58e-01 97.7% 29.4%
3821996 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.56 47.0 3.30e-01 98.8% 40.6%
3825274 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 48.0 3.93e-01 97.7% 75.8%
3307728 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.55 46.0 3.92e-01 100.0% 84.4%
4306604 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 45.0 4.29e-01 93.0% 100.0%
3449368 10.32.1.37 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin 0.54 47.0 3.72e-01 100.0% 83.7%
3732940 304.42.1.1 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.54 41.0 3.35e-01 84.9% 90.0%
5054924 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.54 47.0 3.96e-01 98.8% 78.7%
3928855 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.53 45.0 4.18e-01 96.5% 90.4%
5038685 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 45.0 4.21e-01 95.3% 100.0%
3895304 10.32.1.6 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.53 45.0 3.56e-01 100.0% 69.7%
4082091 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.51 44.0 4.08e-01 100.0% 99.1%
2491349 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.54e-01 98.8% 93.7%
4062520 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 43.0 3.65e-01 98.8% 89.7%
4064076 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.51 43.0 4.40e-01 97.7% 100.0%
D2 medium residues 70-117_150-194
PDB
Domain cluster: representative