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NC_031247.1__YP_009302758.1__BJD67_gp01__00001
Bact-VirNC_031247.1__YP_009302758.1__BJD67_gp01__00001
Identity
- Accession:
- NC_031247 ↗
- Kingdom:
- phage
Quality
86.2
mean pLDDT
Taxonomy
TaxID: 1821551
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-179
Domain cluster:
rep: SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00297__D46-187
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gelB00 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.80 | 68.0 | 6.36e-01 | 88.4% | 96.0% |
| 1byrA00 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.79 | 66.0 | 6.91e-01 | 87.8% | 96.1% |
| 1xdpA03 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.79 | 71.0 | 6.81e-01 | 96.3% | 95.2% |
| 4urjD00 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.76 | 64.0 | 6.26e-01 | 87.8% | 91.4% |
| 7wu1A01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.75 | 64.0 | 5.97e-01 | 89.6% | 98.5% |
| 3hsiA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.75 | 66.0 | 5.78e-01 | 93.9% | 82.9% |
| 1f0iA02 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.73 | 67.0 | 5.54e-01 | 97.6% | 91.1% |
| 7clgA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.73 | 69.0 | 6.54e-01 | 100.0% | 86.3% |
| 4rctA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.70 | 66.0 | 6.33e-01 | 100.0% | 89.7% |
| 2c1lA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.70 | 65.0 | 6.21e-01 | 100.0% | 87.2% |
| 3sq3A01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.69 | 57.0 | 5.50e-01 | 86.6% | 90.7% |
| 1fzrA00 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.63 | 33.0 | 3.66e-01 | 76.2% | 62.8% |
| 1kyfA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.60 | 29.0 | 3.45e-01 | 78.0% | 65.5% |
| 2h00B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 42.0 | 3.89e-01 | 72.0% | 83.8% |
| 3cg4A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 34.0 | 3.81e-01 | 84.1% | 71.4% |
| 5ftwA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 41.0 | 3.90e-01 | 71.3% | 95.8% |
| 3f8xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 29.0 | 3.22e-01 | 90.2% | 56.8% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 28.0 | 3.78e-01 | 85.4% | 90.5% |
| 2lbwA00 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.54 | 35.0 | 4.03e-01 | 86.0% | 88.4% |
| 1su1A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.54 | 38.0 | 3.71e-01 | 73.2% | 83.7% |
| 2g8lA03 | 3.40.50.10880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF01937, DUF89, domain 3 | 0.53 | 42.0 | 4.34e-01 | 83.5% | 100.0% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 41.0 | 4.19e-01 | 84.1% | 95.2% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.51 | 38.0 | 3.31e-01 | 77.4% | 96.4% |
| 8es5A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 31.0 | 3.33e-01 | 78.0% | 70.3% |
| 2aleA00 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.50 | 32.0 | 3.50e-01 | 84.8% | 78.0% |
| 3fdjA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.50 | 33.0 | 3.66e-01 | 72.6% | 84.4% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940371 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.80 | 67.0 | 6.95e-01 | 90.2% | 93.5% |
| 4948223 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.79 | 63.0 | 6.81e-01 | 84.8% | 96.4% |
| 4946828 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.79 | 66.0 | 6.93e-01 | 87.8% | 94.7% |
| 1165491 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.78 | 65.0 | 5.41e-01 | 87.8% | 83.9% |
| 4966181 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.77 | 65.0 | 6.24e-01 | 87.8% | 94.0% |
| 5036368 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.77 | 62.0 | 6.32e-01 | 84.1% | 91.9% |
| 3009966 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.76 | 64.0 | 5.84e-01 | 87.8% | 92.4% |
| 3844392 | 300.1.1.4 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FAM83 | 0.76 | 64.0 | 6.15e-01 | 88.4% | 87.6% |
| 4928710 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.76 | 60.0 | 6.49e-01 | 86.6% | 96.4% |
| 3197670 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.75 | 63.0 | 5.69e-01 | 87.8% | 86.0% |
| 5040292 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.75 | 64.0 | 6.59e-01 | 89.6% | 94.8% |
| 4988540 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.73 | 59.0 | 6.10e-01 | 85.4% | 100.0% |
| 4929041 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.72 | 59.0 | 6.25e-01 | 88.4% | 94.6% |
| 4959005 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.71 | 61.0 | 6.41e-01 | 100.0% | 100.0% |
| 4996059 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.71 | 59.0 | 6.17e-01 | 86.6% | 95.3% |
| 5007802 | 331.4.1.36 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27851 | 0.71 | 30.0 | 4.41e-01 | 75.6% | 85.0% |
| 4953301 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.69 | 57.0 | 5.81e-01 | 87.2% | 89.4% |
| 3180570 | 300.1.1.3 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Tyr-DNA_phospho | 0.68 | 58.0 | 5.29e-01 | 89.0% | 80.5% |
| 4928167 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.68 | 62.0 | 5.88e-01 | 98.2% | 91.8% |
| 4931331 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.67 | 57.0 | 6.00e-01 | 94.5% | 97.3% |
| 4953299 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.67 | 55.0 | 5.59e-01 | 87.2% | 88.3% |
| 3723090 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.66 | 62.0 | 5.57e-01 | 100.0% | 82.7% |
| 3230988 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.66 | 51.0 | 5.45e-01 | 93.3% | 92.4% |
| 5078972 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.66 | 30.0 | 3.98e-01 | 77.4% | 80.0% |
| 3718213 | 300.1.1.3 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Tyr-DNA_phospho | 0.65 | 61.0 | 5.51e-01 | 100.0% | 87.4% |
| 3513857 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.65 | 52.0 | 5.58e-01 | 93.9% | 97.2% |
| 3514255 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.65 | 51.0 | 5.53e-01 | 94.5% | 97.1% |
| 3868033 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.64 | 51.0 | 5.44e-01 | 93.9% | 96.4% |
| 3275691 | 300.1.1.3 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Tyr-DNA_phospho | 0.63 | 57.0 | 5.64e-01 | 99.4% | 92.9% |
| 3833794 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.60 | 42.0 | 3.73e-01 | 70.7% | 83.4% |
| 5004871 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.57 | 27.0 | 3.59e-01 | 76.8% | 81.1% |
| 3353407 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.53 | 46.0 | 3.70e-01 | 93.9% | 83.0% |
| 4958601 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.53 | 37.0 | 4.10e-01 | 70.7% | 88.5% |
| 4954283 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 35.0 | 3.67e-01 | 94.5% | 72.7% |
| 4971197 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.52 | 36.0 | 3.96e-01 | 70.1% | 88.9% |
| 5082498 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.51 | 43.0 | 4.51e-01 | 99.4% | 98.0% |
| 4084160 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.51 | 44.0 | 4.04e-01 | 100.0% | 70.7% |
| 4031598 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.51 | 43.0 | 3.86e-01 | 100.0% | 65.8% |
| 4768813 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.50 | 38.0 | 3.47e-01 | 78.0% | 99.5% |