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NC_031247.1__YP_009302770.1__BJD67_gp13__00013

Bact-Vir

NC_031247.1__YP_009302770.1__BJD67_gp13__00013

Identity

Accession:
NC_031247 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Betterkatzvirus› Gordonia_phage_BetterKatz

TaxID: 1821551

Cluster

View cluster (247 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 35-106
PDB
Domain cluster: rep: MW073100.1__QWT28901.1__vBMoxSR1_gp51__00051__D38-110
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.69 50.0 4.92e-01 94.4% 70.9%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.67 51.0 5.05e-01 98.6% 77.3%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 38.0 2.82e-01 100.0% 21.2%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.65 45.0 4.26e-01 79.2% 60.5%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.62 55.0 4.43e-01 100.0% 65.2%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 45.0 3.82e-01 79.2% 87.7%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 45.0 4.08e-01 80.6% 100.0%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 43.0 3.37e-01 79.2% 77.7%
2z6cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 42.0 3.61e-01 79.2% 90.9%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.63e-01 100.0% 89.0%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.57 49.0 4.35e-01 100.0% 66.1%
1aipE03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 38.0 4.20e-01 70.8% 94.6%
1kk1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 49.0 4.27e-01 97.2% 72.1%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 46.0 4.44e-01 98.6% 80.5%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.57 47.0 3.33e-01 98.6% 67.4%
7zqiA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.19e-01 98.6% 72.1%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 45.0 3.88e-01 94.4% 94.4%
2ae6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 46.0 3.73e-01 95.8% 66.0%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.55 45.0 3.60e-01 91.7% 55.0%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 3.60e-01 79.2% 64.5%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 37.0 3.74e-01 79.2% 68.0%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.54 39.0 3.38e-01 76.4% 62.6%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 3.72e-01 100.0% 67.1%
1eq9A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 3.83e-01 98.6% 57.3%
1xdzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 48.0 3.34e-01 100.0% 68.1%
2kczA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 3.01e-01 75.0% 71.0%
2fmaA00 3.30.1490.140 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain 0.53 39.0 4.16e-01 79.2% 98.3%
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.59e-01 77.8% 71.3%
3ghmA03 2.60.120.830 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 3.32e-01 84.7% 98.6%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.53 46.0 4.03e-01 100.0% 96.5%
1vjhA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 3.35e-01 80.6% 76.7%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.52 36.0 3.86e-01 76.4% 85.2%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.94e-01 100.0% 65.2%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.95e-01 100.0% 64.9%
1ao8A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.52 45.0 3.47e-01 97.2% 99.4%
3ix9A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.52 46.0 3.52e-01 98.6% 97.0%
2vi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.51e-01 100.0% 83.4%
3c8cB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 42.0 3.69e-01 93.1% 83.2%
2wp4B00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.51 41.0 3.44e-01 90.3% 63.6%
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.98e-01 97.2% 93.8%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.82e-01 95.8% 92.9%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 43.0 3.15e-01 98.6% 89.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604610 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 57.0 5.96e-01 97.2% 98.5%
4260208 1.1.13.62 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.69 60.0 5.29e-01 95.8% 65.7%
3511361 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 56.0 5.66e-01 95.8% 91.4%
3283466 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.67 49.0 3.91e-01 79.2% 38.6%
5049368 205.1.1.1 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.65 54.0 4.29e-01 98.6% 44.7%
4030357 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.64 50.0 4.68e-01 97.2% 67.8%
3948350 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.63 56.0 5.00e-01 98.6% 84.0%
3795831 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 51.0 5.20e-01 100.0% 97.1%
1871771 1.1.5.43 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like 0.62 48.0 4.25e-01 100.0% 55.9%
140398 304.124.1.4 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF4128 0.62 55.0 4.43e-01 100.0% 65.2%
3926448 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.62 51.0 4.70e-01 97.2% 69.5%
4012123 872.1.1.0 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.61 44.0 4.61e-01 77.8% 100.0%
3595114 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 52.0 4.64e-01 97.2% 68.6%
5022644 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 48.0 4.41e-01 97.2% 66.3%
3798057 304.18.1.0 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.60 44.0 3.89e-01 79.2% 65.5%
3256508 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 47.0 4.52e-01 98.6% 72.9%
3263244 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 42.0 4.25e-01 76.4% 98.6%
3764256 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.58 47.0 4.29e-01 100.0% 66.0%
3560523 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.57 48.0 4.27e-01 100.0% 64.8%
3855829 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.86e-01 100.0% 51.6%
5004179 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 47.0 4.50e-01 100.0% 85.9%
4958890 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.55 40.0 3.88e-01 86.1% 68.8%
4400928 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.55 47.0 4.03e-01 100.0% 93.6%
4282509 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 44.0 2.62e-01 91.7% 14.7%
4379531 223.1.1.41 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.53 45.0 3.41e-01 98.6% 50.8%
4003309 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 39.0 3.62e-01 97.2% 61.1%
4961858 1.1.9.3 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.53 45.0 3.64e-01 98.6% 55.3%
4968903 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 45.0 3.71e-01 100.0% 90.0%
3967508 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 43.0 3.80e-01 94.4% 89.6%
5035459 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 44.0 4.20e-01 100.0% 78.8%
4353676 223.1.1.41 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.53 45.0 3.74e-01 98.6% 73.3%
3544039 11.2.1.19 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3657 0.52 39.0 2.54e-01 80.6% 28.1%
3223498 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 41.0 3.54e-01 91.7% 83.1%
3511282 11.1.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida 0.52 46.0 3.77e-01 100.0% 70.4%
3877896 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.52 44.0 4.01e-01 100.0% 70.0%
4542091 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 43.0 3.64e-01 95.8% 88.5%
4980708 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 43.0 3.54e-01 95.8% 79.3%
4949932 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 42.0 3.43e-01 95.8% 75.2%