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NC_031253.1__YP_009303151.1__KCH39_gp003__00003
Bact-VirNC_031253.1__YP_009303151.1__KCH39_gp003__00003
Identity
- Accession:
- NC_031253 ↗
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Taxonomy
TaxID: 1805457
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 194-249
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.58 | 35.0 | 2.69e-01 | 98.2% | 22.4% |
| 1dkqA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.58 | 40.0 | 3.18e-01 | 73.2% | 59.7% |
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.56 | 41.0 | 2.50e-01 | 87.5% | 82.6% |
| 2incA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.56 | 43.0 | 2.58e-01 | 89.3% | 82.1% |
| 1hh5A00 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.55 | 39.0 | 3.74e-01 | 76.8% | 95.6% |
| 2gu0A02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.53 | 40.0 | 3.05e-01 | 87.5% | 47.2% |
| 3u1nB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 40.0 | 2.61e-01 | 91.1% | 67.4% |
| 2vlaA02 | 1.10.1740.180 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.52 | 37.0 | 3.39e-01 | 91.1% | 54.9% |
| 4blpB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 2.59e-01 | 85.7% | 62.2% |
| 2jhjA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.51 | 37.0 | 3.04e-01 | 82.1% | 90.0% |
| 2cw8A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.50 | 41.0 | 3.06e-01 | 98.2% | 95.9% |
| 2xrfC00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.50 | 40.0 | 2.71e-01 | 100.0% | 81.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4986319 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.64 | 31.0 | 3.28e-01 | 80.4% | 50.0% |
| 4581682 | 109.4.1.560 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mus7 | 0.62 | 44.0 | 2.44e-01 | 78.6% | 11.2% |
| 3611121 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 45.0 | 3.01e-01 | 87.5% | 37.1% |
| 3211768 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 40.0 | 3.39e-01 | 76.8% | 50.5% |
| 3939417 | 109.4.1.449 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2,TPR_8 | 0.57 | 43.0 | 2.64e-01 | 87.5% | 18.8% |
| 5068328 | 141.1.1.1 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt | 0.53 | 38.0 | 2.43e-01 | 80.4% | 49.4% |
| 3184260 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.51 | 40.0 | 2.49e-01 | 92.9% | 67.1% |
D2
medium
residues 263-294_318-351