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NC_031253.1__YP_009303244.1__KCH39_gp080__00096
Bact-VirNC_031253.1__YP_009303244.1__KCH39_gp080__00096
Identity
- Accession:
- NC_031253 ↗
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Taxonomy
TaxID: 1805457
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-52
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l9rA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.68 | 44.0 | 3.06e-01 | 96.0% | 19.4% |
| 1e8cA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.67 | 57.0 | 3.71e-01 | 100.0% | 27.7% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.64 | 46.0 | 4.91e-01 | 82.0% | 100.0% |
| 2eyqA07 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.64 | 55.0 | 3.98e-01 | 100.0% | 51.0% |
| 7d27A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.63 | 53.0 | 3.49e-01 | 100.0% | 26.5% |
| 1iv8A02 | 3.30.1590.10 | Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 | 0.62 | 50.0 | 3.90e-01 | 94.0% | 45.8% |
| 4c12A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.62 | 52.0 | 3.43e-01 | 100.0% | 25.2% |
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.60 | 44.0 | 3.23e-01 | 82.0% | 39.2% |
| 3nwnA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.60 | 51.0 | 3.20e-01 | 98.0% | 34.4% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 45.0 | 3.72e-01 | 84.0% | 84.5% |
| 2vvlG01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 50.0 | 3.24e-01 | 100.0% | 87.1% |
| 1pjqA02 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.57 | 37.0 | 3.98e-01 | 98.0% | 88.9% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.57 | 38.0 | 3.20e-01 | 96.0% | 38.9% |
| 6hgcA01 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.57 | 43.0 | 2.99e-01 | 88.0% | 75.4% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.56 | 46.0 | 3.26e-01 | 98.0% | 91.9% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 42.0 | 3.14e-01 | 86.0% | 30.0% |
| 3twkA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 46.0 | 3.38e-01 | 94.0% | 49.7% |
| 3dnhA02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.56 | 44.0 | 3.85e-01 | 92.0% | 72.3% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 46.0 | 3.26e-01 | 94.0% | 31.9% |
| 3h5aD01 | 3.90.930.70 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.55 | 44.0 | 3.83e-01 | 98.0% | 89.8% |
| 5i92F01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 48.0 | 3.21e-01 | 98.0% | 27.3% |
| 1milA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 44.0 | 3.60e-01 | 96.0% | 69.2% |
| 3d8kD00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 40.0 | 2.43e-01 | 80.0% | 17.9% |
| 2sliA03 | 2.40.220.10 | Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 | 0.54 | 41.0 | 3.41e-01 | 88.0% | 77.0% |
| 3ja8204 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 46.0 | 2.82e-01 | 100.0% | 14.3% |
| 4rckA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.53 | 44.0 | 3.01e-01 | 98.0% | 26.5% |
| 2memA00 | 3.90.1150.190 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › SLED domain | 0.53 | 44.0 | 3.48e-01 | 100.0% | 78.2% |
| 1o5wB02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.53 | 45.0 | 3.14e-01 | 100.0% | 38.5% |
| 1o5wA02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.53 | 46.0 | 2.92e-01 | 100.0% | 22.9% |
| 1eepA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 45.0 | 2.80e-01 | 100.0% | 83.8% |
| 2hc8A00 | 2.70.150.10 | Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A | 0.52 | 41.0 | 3.33e-01 | 96.0% | 98.2% |
| 1b37A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 42.0 | 2.83e-01 | 100.0% | 92.5% |
| 3tdnA00 | 3.40.50.12600 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 38.0 | 3.04e-01 | 100.0% | 35.5% |
| 1f32A02 | 3.30.1120.50 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 | 0.52 | 38.0 | 3.67e-01 | 84.0% | 100.0% |
| 5n1tA03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.52 | 40.0 | 3.62e-01 | 86.0% | 74.6% |
| 1f9xA00 | 1.10.1170.10 | Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A | 0.51 | 36.0 | 2.92e-01 | 80.0% | 67.5% |
| 2hg7A00 | 3.30.56.60 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › XkdW-like | 0.50 | 38.0 | 3.60e-01 | 82.0% | 95.0% |
| 1j7xA02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.50 | 36.0 | 2.44e-01 | 78.0% | 66.8% |
| 1i24A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 44.0 | 2.86e-01 | 100.0% | 94.9% |
| 6n8eA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.50 | 43.0 | 3.03e-01 | 98.0% | 69.8% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3787709 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.70 | 50.0 | 5.37e-01 | 76.0% | 100.0% |
| 4990102 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 49.0 | 5.17e-01 | 78.0% | 91.1% |
| 3723017 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.67 | 49.0 | 4.61e-01 | 82.0% | 73.8% |
| 5044314 | 3203.1.1.0 ↗ | a+b two layers › Putative oxidoreductase › Putative oxidoreductase › Putative oxidoreductase | 0.65 | 45.0 | 3.80e-01 | 74.0% | 90.0% |
| 3721997 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 55.0 | 5.53e-01 | 96.0% | 96.0% |
| 3493192 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 48.0 | 4.61e-01 | 82.0% | 70.0% |
| 3475436 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.65 | 51.0 | 4.60e-01 | 88.0% | 62.9% |
| 3566388 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 44.0 | 4.65e-01 | 72.0% | 83.7% |
| 3882796 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.64 | 49.0 | 4.22e-01 | 86.0% | 50.6% |
| 5012088 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.64 | 54.0 | 4.23e-01 | 96.0% | 54.5% |
| 3606956 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 48.0 | 5.00e-01 | 92.0% | 97.8% |
| 3869223 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 47.0 | 4.08e-01 | 86.0% | 52.5% |
| 3964295 | 230.4.1.1 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE | 0.62 | 32.0 | 2.70e-01 | 100.0% | 25.6% |
| 2080337 | 158.1.1.1 ↗ | alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase | 0.60 | 51.0 | 2.90e-01 | 100.0% | 46.0% |
| 5075187 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.60 | 47.0 | 4.47e-01 | 88.0% | 85.0% |
| 3483955 | 386.1.1.6 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 | 0.60 | 49.0 | 4.27e-01 | 100.0% | 58.8% |
| 3331838 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.59 | 45.0 | 4.60e-01 | 90.0% | 92.0% |
| 5011586 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.59 | 50.0 | 3.84e-01 | 100.0% | 83.2% |
| 5011134 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.59 | 45.0 | 3.29e-01 | 92.0% | 100.0% |
| 4951132 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 49.0 | 3.32e-01 | 100.0% | 23.9% |
| 3385696 | 854.1.1.0 ↗ | extended segments › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE | 0.58 | 46.0 | 4.07e-01 | 94.0% | 77.2% |
| 4931379 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 47.0 | 3.18e-01 | 96.0% | 93.7% |
| 5046677 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.57 | 51.0 | 3.35e-01 | 100.0% | 93.6% |
| 3976770 | 3747.1.1.1 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod | 0.56 | 44.0 | 3.50e-01 | 86.0% | 82.0% |
| 3032850 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.56 | 49.0 | 3.44e-01 | 100.0% | 68.5% |
| 4567341 | 4989.1.1.1 ↗ | a+b two layers › XkdW-like › XkdW-like › XkdW-like › XkdW | 0.55 | 42.0 | 4.02e-01 | 84.0% | 100.0% |
| 3720263 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.55 | 46.0 | 2.70e-01 | 100.0% | 10.7% |
| 3250677 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.54 | 47.0 | 3.18e-01 | 100.0% | 31.5% |
| 3253944 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.54 | 46.0 | 3.24e-01 | 100.0% | 29.7% |
| 3696602 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.53 | 44.0 | 2.73e-01 | 100.0% | 91.3% |
| 3339376 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 39.0 | 3.09e-01 | 84.0% | 57.4% |
| 3277064 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 43.0 | 3.11e-01 | 98.0% | 57.6% |
| 3289942 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 3.54e-01 | 92.0% | 95.3% |
| 3790782 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.52 | 38.0 | 3.11e-01 | 80.0% | 66.0% |
| 3476118 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.52 | 44.0 | 3.24e-01 | 98.0% | 52.9% |
| 4002410 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 43.0 | 3.21e-01 | 100.0% | 36.0% |
| 4623982 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.52 | 41.0 | 2.74e-01 | 100.0% | 88.9% |
| 5035958 | 2002.3.1.8 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › GxGYxYP_C | 0.52 | 44.0 | 2.82e-01 | 98.0% | 48.7% |
| 3787619 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.51 | 38.0 | 2.97e-01 | 82.0% | 84.3% |
| 4990890 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.51 | 37.0 | 2.76e-01 | 84.0% | 83.0% |
| 4022896 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.00e-01 | 100.0% | 30.3% |
| 3714105 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.51 | 42.0 | 2.88e-01 | 100.0% | 27.3% |
| 3607176 | 101.17.1.4 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_2 | 0.50 | 32.0 | 2.80e-01 | 74.0% | 39.0% |
| 4945 | 4989.1.1.1 ↗ | a+b two layers › XkdW-like › XkdW-like › XkdW-like › XkdW | 0.50 | 38.0 | 3.60e-01 | 82.0% | 95.0% |
| 5016928 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.50 | 37.0 | 2.49e-01 | 90.0% | 18.6% |
| 259870 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.50 | 39.0 | 2.55e-01 | 100.0% | 17.2% |
| 1270868 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.50 | 39.0 | 2.54e-01 | 100.0% | 16.7% |
| 4024069 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.50 | 42.0 | 3.05e-01 | 100.0% | 53.1% |
| 4939058 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.50 | 40.0 | 2.67e-01 | 100.0% | 36.4% |
D2
high
residues 55-100
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vpbA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.75 | 63.0 | 5.65e-01 | 100.0% | 91.3% |
| 4mamA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.74 | 63.0 | 5.33e-01 | 100.0% | 74.1% |
| 2dwcB02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.71 | 60.0 | 5.64e-01 | 100.0% | 84.7% |
| 2ahmH02 | 3.30.70.3540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain | 0.71 | 59.0 | 4.83e-01 | 100.0% | 62.4% |
| 3glkA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.70 | 59.0 | 5.52e-01 | 100.0% | 96.6% |
| 3me8B00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.69 | 49.0 | 3.36e-01 | 76.1% | 64.1% |
| 3k5iA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.68 | 55.0 | 4.98e-01 | 100.0% | 85.7% |
| 2cu3B00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.65 | 53.0 | 4.97e-01 | 100.0% | 88.9% |
| 5t17A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.62 | 50.0 | 4.31e-01 | 100.0% | 71.8% |
| 2a8eA00 | 3.30.930.20 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 | 0.62 | 50.0 | 3.38e-01 | 100.0% | 34.3% |
| 1cr5A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.61 | 51.0 | 4.41e-01 | 97.8% | 100.0% |
| 4chkB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 47.0 | 4.05e-01 | 100.0% | 84.6% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.60 | 47.0 | 4.51e-01 | 100.0% | 91.5% |
| 1adeA03 | 3.90.170.10 | Alpha Beta › Alpha-Beta Complex › Adenylosuccinate Synthetase; Chain A, domain 3 › Adenylosuccinate Synthetase, subunit A, domain 3 | 0.60 | 47.0 | 3.28e-01 | 91.3% | 58.4% |
| 1wdjA00 | 3.90.1570.10 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A | 0.59 | 41.0 | 2.81e-01 | 73.9% | 24.7% |
| 3uc2A00 | 2.60.40.3340 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 | 0.59 | 44.0 | 3.37e-01 | 87.0% | 68.5% |
| 4ynmB00 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.59 | 42.0 | 2.85e-01 | 97.8% | 18.9% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 44.0 | 4.23e-01 | 93.5% | 95.0% |
| 2dl9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 48.0 | 4.03e-01 | 100.0% | 76.4% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 47.0 | 3.85e-01 | 100.0% | 92.9% |
| 4a55A01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 45.0 | 2.90e-01 | 100.0% | 26.1% |
| 6vtmB00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 46.0 | 3.87e-01 | 100.0% | 92.7% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.57 | 43.0 | 2.84e-01 | 100.0% | 19.9% |
| 1t8sA02 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.57 | 45.0 | 2.87e-01 | 100.0% | 21.9% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 46.0 | 3.92e-01 | 100.0% | 79.5% |
| 1ef1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 45.0 | 4.00e-01 | 100.0% | 94.9% |
| 1zdeA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.56 | 46.0 | 3.28e-01 | 100.0% | 88.7% |
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.56 | 48.0 | 4.20e-01 | 100.0% | 76.7% |
| 7agvB01 | 3.30.70.1450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain | 0.56 | 45.0 | 3.94e-01 | 100.0% | 66.7% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.56 | 41.0 | 3.73e-01 | 93.5% | 87.0% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 47.0 | 3.77e-01 | 100.0% | 47.5% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 46.0 | 3.70e-01 | 100.0% | 86.5% |
| 4b6zA01 | 2.60.40.3120 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 44.0 | 3.51e-01 | 100.0% | 59.3% |
| 2vdrB02 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.55 | 44.0 | 3.25e-01 | 100.0% | 34.0% |
| 1wgyA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 41.0 | 3.77e-01 | 100.0% | 93.4% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.35e-01 | 78.3% | 64.4% |
| 3orjA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.67e-01 | 100.0% | 80.0% |
| 4apmA01 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.53 | 37.0 | 3.07e-01 | 80.4% | 55.3% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 45.0 | 3.13e-01 | 100.0% | 72.0% |
| 2va0A00 | 3.30.450.160 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 41.0 | 3.40e-01 | 100.0% | 83.8% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5053864 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.70 | 57.0 | 3.97e-01 | 100.0% | 30.0% |
| 3728587 | 2003.1.2.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N | 0.68 | 46.0 | 2.65e-01 | 78.3% | 7.5% |
| 3677168 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.67 | 46.0 | 3.22e-01 | 73.9% | 54.8% |
| 3272439 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 53.0 | 4.51e-01 | 100.0% | 92.9% |
| 3240213 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.63 | 41.0 | 3.60e-01 | 95.7% | 42.9% |
| 4391783 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.63 | 46.0 | 3.30e-01 | 82.6% | 75.5% |
| 5039333 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.63 | 53.0 | 4.64e-01 | 100.0% | 86.7% |
| 5036616 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.63 | 50.0 | 4.46e-01 | 91.3% | 91.4% |
| 3719098 | 2002.1.1.192 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase | 0.63 | 48.0 | 2.60e-01 | 93.5% | 7.1% |
| 3915455 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.62 | 51.0 | 4.51e-01 | 100.0% | 96.0% |
| 3992651 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.62 | 41.0 | 3.36e-01 | 97.8% | 36.5% |
| 3242772 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.62 | 40.0 | 3.67e-01 | 97.8% | 50.0% |
| 4407699 | 604.12.1.51 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › 5TM-5TMR_LYT | 0.62 | 45.0 | 2.88e-01 | 78.3% | 52.7% |
| 4967397 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.62 | 48.0 | 4.38e-01 | 89.1% | 93.8% |
| 3078875 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.60 | 49.0 | 3.44e-01 | 100.0% | 40.0% |
| 3217652 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.59 | 39.0 | 3.27e-01 | 95.7% | 36.5% |
| 3837942 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.58 | 48.0 | 3.89e-01 | 100.0% | 54.0% |
| 4022833 | 4027.1.1.0 ↗ | beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit | 0.58 | 40.0 | 4.24e-01 | 76.1% | 95.0% |
| 4620061 | 4043.1.1.1 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 0.58 | 40.0 | 3.03e-01 | 78.3% | 28.7% |
| 3386704 | 221.8.1.3 ↗ | a+b two layers › beta-Grasp › GfcC › GfcC › SLBB | 0.57 | 46.0 | 4.13e-01 | 100.0% | 86.7% |
| 3819239 | 221.1.1.13 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA | 0.57 | 44.0 | 3.79e-01 | 100.0% | 80.0% |
| 3308276 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.57 | 44.0 | 2.77e-01 | 93.5% | 25.4% |
| 3815609 | 207.1.1.60 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_8 | 0.57 | 43.0 | 2.73e-01 | 95.7% | 23.1% |
| 3889364 | 221.1.1.164 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF29299 | 0.56 | 45.0 | 3.94e-01 | 100.0% | 91.3% |
| 3924113 | 221.7.1.1 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E2_bind | 0.56 | 46.0 | 3.87e-01 | 100.0% | 84.3% |
| 3592612 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 44.0 | 3.91e-01 | 100.0% | 93.8% |
| 3937822 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.55 | 39.0 | 3.14e-01 | 95.7% | 36.0% |
| 5062794 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 3.65e-01 | 100.0% | 74.0% |
| 3264263 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 43.0 | 3.11e-01 | 100.0% | 41.7% |
| 3376654 | 3289.1.1.0 ↗ | alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 | 0.54 | 41.0 | 2.22e-01 | 84.8% | 12.5% |
| 4954389 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.54 | 44.0 | 3.22e-01 | 100.0% | 50.0% |
| 4079232 | 3351.1.1.0 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 | 0.53 | 38.0 | 3.05e-01 | 80.4% | 82.7% |
| 5010887 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.53 | 38.0 | 2.74e-01 | 82.6% | 40.6% |
| 5044901 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 42.0 | 3.35e-01 | 100.0% | 76.5% |
| 3239852 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.53 | 41.0 | 2.78e-01 | 100.0% | 29.8% |
| 3650414 | 4027.1.1.0 ↗ | beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit | 0.53 | 41.0 | 4.09e-01 | 89.1% | 90.0% |
| 3573562 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 39.0 | 2.27e-01 | 84.8% | 12.0% |
| 5070922 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.51 | 42.0 | 2.49e-01 | 95.7% | 26.9% |
| 3618151 | 4178.1.1.1 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 | 0.51 | 40.0 | 3.01e-01 | 100.0% | 49.7% |