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NC_031253.1__YP_009303247.1__KCH39_gp077__00099

Bact-Vir

NC_031253.1__YP_009303247.1__KCH39_gp077__00099

Identity

Accession:
NC_031253 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bippervirus› Mycobacterium_phage_Bipper

TaxID: 1805457

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-86
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hjhA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.65 42.0 4.11e-01 76.5% 61.6%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.61 50.0 3.35e-01 90.1% 28.0%
6ro0B01 3.10.40.10 Alpha Beta › Roll › Pertussis Toxin; Chain B, domain 1 › Aerolysin/Pertussis toxin (APT), N-terminal domain 0.59 46.0 4.54e-01 85.2% 79.1%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.58 47.0 3.16e-01 90.1% 27.7%
1y4wA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 46.0 3.81e-01 95.1% 72.2%
4jdeA01 2.60.40.3820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 50.0 4.20e-01 100.0% 86.1%
3vmaA03 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.54 40.0 3.92e-01 79.0% 70.0%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 43.0 3.46e-01 93.8% 76.3%
4hstB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.53 34.0 3.70e-01 91.4% 79.4%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 43.0 3.45e-01 93.8% 74.0%
7x4pA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 42.0 3.44e-01 90.1% 86.6%
6m3yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 4.05e-01 100.0% 87.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.62 41.0 2.36e-01 77.8% 6.5%
None — 0.62 41.0 2.59e-01 77.8% 13.3%
3965920 506.2.1.2 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.62 41.0 4.00e-01 77.8% 61.1%
3988221 2004.1.1.554 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter 0.62 41.0 2.65e-01 77.8% 15.1%
2539927 506.2.1.2 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.62 41.0 4.00e-01 77.8% 60.9%
2886528 356.1.1.1 ↗ few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors › Pacifastin_I 0.61 28.0 3.76e-01 91.4% 86.8%
5048316 2004.1.1.1221 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27431 0.61 42.0 2.63e-01 76.5% 14.1%
4997234 2004.1.1.554 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter 0.61 41.0 2.46e-01 77.8% 9.7%
4319170 2004.1.1.554 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter 0.61 41.0 2.65e-01 77.8% 14.9%
4489808 506.2.1.2 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.61 41.0 4.07e-01 76.5% 65.9%
5051212 506.2.1.2 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.61 41.0 4.02e-01 76.5% 63.3%
4135015 506.2.1.2 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.60 41.0 4.01e-01 76.5% 63.3%
3587801 2004.1.1.554 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter 0.60 41.0 2.62e-01 77.8% 14.9%
5001934 2004.1.1.554 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter 0.60 41.0 2.56e-01 76.5% 13.9%
None — 0.60 41.0 2.47e-01 76.5% 11.1%
4405609 506.2.1.2 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.60 40.0 3.92e-01 77.8% 62.2%
4214695 506.2.1.0 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain 0.59 40.0 2.37e-01 77.8% 8.6%
None — 0.59 41.0 2.53e-01 77.8% 12.7%
5051523 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 42.0 3.74e-01 77.8% 58.3%
3056510 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 37.0 2.96e-01 71.6% 83.0%
5019922 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 2.99e-01 100.0% 86.5%
3233074 11.29.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › PUD homologs › PUD homologs › PUD1_2 0.50 42.0 3.59e-01 100.0% 79.3%
3290377 5.1.3.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.50 42.0 3.04e-01 100.0% 94.4%