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NC_031253.1__YP_009303249.1__KCH39_gp075__00101
Bact-VirNC_031253.1__YP_009303249.1__KCH39_gp075__00101
Identity
- Accession:
- NC_031253 ↗
- Kingdom:
- phage
Quality
88.5
mean pLDDT
Taxonomy
TaxID: 1805457
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 41-134
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26571.1 best | VldE | 88.0 | 5.20e-25 | 87.2% | 77.3% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2phcB01 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.83 | 52.0 | 5.55e-01 | 98.9% | 72.3% |
| 3lzhA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 42.0 | 4.26e-01 | 94.7% | 72.5% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.61 | 38.0 | 3.84e-01 | 98.9% | 61.7% |
| 5m07A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 42.0 | 4.33e-01 | 97.9% | 76.9% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.59 | 36.0 | 3.63e-01 | 84.0% | 59.6% |
| 2mkhA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 36.0 | 3.62e-01 | 88.3% | 59.8% |
| 4qnyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 47.0 | 4.40e-01 | 93.6% | 86.6% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.55 | 42.0 | 4.51e-01 | 98.9% | 96.2% |
| 7lgjA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.55 | 45.0 | 3.45e-01 | 92.6% | 94.4% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.54 | 41.0 | 3.76e-01 | 81.9% | 70.2% |
| 1jyoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 40.0 | 3.64e-01 | 98.9% | 58.5% |
| 2eigA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 47.0 | 3.58e-01 | 100.0% | 88.7% |
| 4w8jA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 42.0 | 3.64e-01 | 88.3% | 100.0% |
| 5t5lA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 3.56e-01 | 100.0% | 87.8% |
| 6dgiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 36.0 | 4.13e-01 | 76.6% | 100.0% |
| 3bfmA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 45.0 | 3.76e-01 | 100.0% | 65.4% |
| 1l6rA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.52 | 38.0 | 3.30e-01 | 79.8% | 79.6% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3953991 | 3012.1.1.12 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF26571 | 0.97 | 94.0 | 7.95e-01 | 100.0% | 79.3% |
| 3959334 | 3012.1.1.12 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF26571 | 0.97 | 86.0 | 7.55e-01 | 98.9% | 67.2% |
| 3960492 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.97 | 86.0 | 7.75e-01 | 98.9% | 71.7% |
| 3205223 | 307.1.1.9 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VldE | 0.88 | 80.0 | 7.37e-01 | 94.7% | 79.1% |
| 3990075 | 307.1.1.9 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VldE | 0.87 | 81.0 | 7.46e-01 | 96.8% | 80.9% |
| 3186023 | 304.53.1.1 ↗ | a+b two layers › Alpha-beta plaits › DOPA dioxygenase-like › DOPA dioxygenase-like › DOPA_dioxygen | 0.72 | 47.0 | 3.77e-01 | 88.3% | 35.0% |
| 3289328 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.67 | 54.0 | 5.00e-01 | 88.3% | 69.6% |
| 3962799 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.61 | 52.0 | 3.45e-01 | 94.7% | 27.1% |
| 3597630 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.55 | 39.0 | 3.91e-01 | 72.3% | 97.9% |
| 3972995 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 39.0 | 3.17e-01 | 80.9% | 95.1% |
| 5026463 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.50 | 41.0 | 3.38e-01 | 87.2% | 90.9% |