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NC_031253.1__YP_009303276.1__KCH39_gp048__00128

Bact-Vir

NC_031253.1__YP_009303276.1__KCH39_gp048__00128

Identity

Accession:
NC_031253 ↗
Kingdom:
phage

Quality

68.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bippervirus› Mycobacterium_phage_Bipper

TaxID: 1805457

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: representative
CATH (65)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y24A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.70 53.0 4.55e-01 88.2% 51.4%
2huhA01 2.60.40.1600 Mainly Beta › Sandwich › Immunoglobulin-like › Smr-associated-like 0.66 58.0 4.68e-01 100.0% 51.5%
3cjiB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 58.0 3.97e-01 98.5% 39.1%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.66 58.0 4.00e-01 98.5% 39.6%
2mizA00 2.60.40.2900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 56.0 4.37e-01 100.0% 74.4%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 3.98e-01 98.5% 42.7%
1cidA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 53.0 4.70e-01 94.1% 78.3%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.65 57.0 4.38e-01 100.0% 63.3%
4h40A01 2.60.40.3730 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.64 57.0 4.36e-01 100.0% 77.8%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.62 51.0 4.23e-01 95.6% 88.5%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 4.72e-01 89.7% 75.9%
3up6A02 2.60.40.3380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 53.0 4.14e-01 100.0% 63.5%
4epsA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.61 50.0 4.13e-01 92.6% 60.2%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.61 53.0 4.58e-01 98.5% 87.9%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 48.0 3.10e-01 88.2% 33.2%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 53.0 4.63e-01 100.0% 74.3%
4h3wA01 2.60.290.20 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › Protein of unknown function (DUF4621), C-terminal domain 0.60 51.0 4.27e-01 98.5% 58.4%
2dkmA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.46e-01 100.0% 63.5%
5xnrA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 52.0 4.29e-01 100.0% 89.8%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.59 48.0 4.37e-01 92.6% 71.6%
6wl5A01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.59 47.0 3.65e-01 86.8% 84.6%
5z9sA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 4.01e-01 91.2% 70.7%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.59 50.0 3.75e-01 95.6% 91.3%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 3.99e-01 91.2% 75.8%
4gs7C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 4.38e-01 100.0% 66.3%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 44.0 3.28e-01 80.9% 53.7%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.58 47.0 3.49e-01 94.1% 63.3%
1guiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 48.0 3.77e-01 94.1% 43.2%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 47.0 4.10e-01 92.6% 92.7%
3sh4A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.52e-01 95.6% 65.1%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 50.0 4.65e-01 100.0% 80.5%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.57 46.0 4.28e-01 86.8% 86.9%
4xl1E01 2.60.40.3510 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 3.87e-01 100.0% 72.9%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 4.31e-01 100.0% 73.9%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 45.0 3.41e-01 88.2% 58.2%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 45.0 3.69e-01 91.2% 70.8%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 45.0 4.03e-01 88.2% 79.6%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.56 45.0 3.79e-01 88.2% 93.2%
2x32A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.56 43.0 3.32e-01 86.8% 99.4%
5b71E00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 45.0 4.18e-01 92.6% 71.0%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.71e-01 91.2% 82.6%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 43.0 3.71e-01 92.6% 93.8%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.56 44.0 3.46e-01 94.1% 54.7%
3kb5A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.56 47.0 3.52e-01 100.0% 61.7%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.56 44.0 4.01e-01 92.6% 64.5%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.17e-01 100.0% 77.4%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 42.0 3.40e-01 83.8% 89.9%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.55 46.0 3.88e-01 92.6% 94.7%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 4.03e-01 100.0% 70.1%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 42.0 3.63e-01 82.4% 81.1%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 48.0 4.19e-01 100.0% 70.5%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 41.0 3.81e-01 91.2% 62.6%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.62e-01 92.6% 83.6%
3fruA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 43.0 3.24e-01 89.7% 59.9%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.54 45.0 3.23e-01 100.0% 36.7%
1od3A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 43.0 3.59e-01 94.1% 50.4%
1xsqA00 2.60.120.480 Mainly Beta › Sandwich › Jelly Rolls › Ureidoglycolate hydrolase 0.53 46.0 3.62e-01 100.0% 75.8%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 44.0 3.42e-01 94.1% 47.2%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.69e-01 94.1% 76.7%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 39.0 4.01e-01 80.9% 83.6%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.53 46.0 3.61e-01 100.0% 59.6%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.52 41.0 3.52e-01 86.8% 76.3%
2wl1A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.52 42.0 3.29e-01 100.0% 94.8%
5j11C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.03e-01 100.0% 71.4%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 30.0 3.06e-01 75.0% 60.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039150 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 59.0 4.91e-01 100.0% 53.9%
3626906 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.68 58.0 4.40e-01 94.1% 46.9%
3217256 11.1.1.956 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_5th 0.66 59.0 5.01e-01 100.0% 77.3%
3472006 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 53.0 4.39e-01 92.6% 67.7%
3687610 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.64 52.0 3.57e-01 91.2% 84.7%
3439345 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 57.0 4.73e-01 100.0% 95.0%
2512673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 4.60e-01 98.5% 71.4%
3366196 11.1.4.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 0.64 56.0 4.47e-01 100.0% 57.9%
5012230 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 52.0 4.67e-01 89.7% 84.2%
3497478 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.63 49.0 3.54e-01 88.2% 40.0%
4100425 11.1.4.90 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4550 0.63 52.0 4.26e-01 94.1% 72.3%
5044830 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 55.0 4.70e-01 100.0% 70.0%
4871072 2492.1.1.23 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NAD2 0.62 51.0 3.64e-01 88.2% 48.2%
3820819 11.2.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.61 53.0 4.05e-01 100.0% 68.2%
3179841 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 54.0 4.52e-01 100.0% 64.2%
3880284 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.61 47.0 3.49e-01 88.2% 43.4%
3179842 11.1.1.644 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.61 52.0 4.40e-01 100.0% 58.3%
4970282 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 4.59e-01 100.0% 71.1%
3286007 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.60 46.0 3.22e-01 86.8% 53.3%
1069108 10.2.1.58 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gp10-like 0.60 50.0 4.30e-01 100.0% 57.7%
4384109 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 53.0 4.92e-01 100.0% 80.7%
3280624 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.60 46.0 3.24e-01 88.2% 54.1%
3731305 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.60 47.0 3.92e-01 88.2% 91.2%
4071322 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.60 52.0 4.02e-01 100.0% 83.1%
4019681 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 52.0 4.15e-01 100.0% 51.4%
3305050 11.1.1.47 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.59 51.0 4.39e-01 100.0% 59.1%
5076544 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 4.64e-01 100.0% 74.7%
3221204 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 52.0 4.57e-01 100.0% 71.0%
2505857 1.2.1.2 ↗ beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain › Calici_coat_C 0.58 50.0 4.06e-01 100.0% 76.5%
4963894 11.1.1.1442 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29449 0.57 50.0 4.32e-01 100.0% 84.5%
4929232 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 4.09e-01 92.6% 63.8%
4491474 10.32.1.31 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.57 47.0 3.52e-01 92.6% 88.9%
3929545 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 3.96e-01 100.0% 80.7%
5041444 10.1.2.184 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.57 50.0 3.76e-01 100.0% 56.6%
3279441 10.32.1.31 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.57 47.0 3.42e-01 92.6% 80.0%
5054941 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.06e-01 100.0% 82.5%
5041422 10.1.2.184 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.56 48.0 3.57e-01 100.0% 71.1%
3272865 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.23e-01 92.6% 83.5%
3389881 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.56 47.0 3.45e-01 100.0% 80.0%
3927221 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.56 48.0 4.08e-01 100.0% 62.5%
3931538 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.18e-01 100.0% 74.3%
3267631 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 46.0 3.24e-01 94.1% 60.0%
3550081 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.56 45.0 3.29e-01 89.7% 54.2%
3626905 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 47.0 3.60e-01 100.0% 49.7%
3414510 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 46.0 3.50e-01 100.0% 84.3%
3927166 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 47.0 4.02e-01 100.0% 61.7%
3704589 10.32.1.31 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.55 46.0 3.46e-01 100.0% 87.2%
5040077 10.1.2.184 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.54 43.0 3.29e-01 92.6% 71.4%
5049237 10.1.2.184 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.54 46.0 3.33e-01 100.0% 85.9%
3693963 10.12.1.19 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ureidogly_lyase 0.54 46.0 3.34e-01 100.0% 72.9%
4946469 10.1.2.184 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.54 45.0 3.35e-01 100.0% 88.3%
3926166 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 46.0 4.00e-01 100.0% 64.5%
4949922 11.1.1.1122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7282 0.54 44.0 3.60e-01 92.6% 56.2%
3882154 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 43.0 3.38e-01 100.0% 49.7%
5008468 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 38.0 2.98e-01 80.9% 34.4%
3188434 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 43.0 3.36e-01 100.0% 50.3%
3920444 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 42.0 3.23e-01 100.0% 46.1%
D2 medium residues 134-191
PDB
Domain cluster: rep: KM272873.1__AIM19606.1__X__00001__D205-272
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.72 51.0 5.70e-01 82.8% 100.0%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.69 51.0 5.22e-01 84.5% 81.8%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 52.0 3.88e-01 93.1% 53.6%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 46.0 3.41e-01 81.0% 55.8%
2g3wA00 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.54 37.0 2.72e-01 72.4% 50.3%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.54 45.0 3.18e-01 96.6% 62.8%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 44.0 3.69e-01 100.0% 54.4%
3a1pB00 3.30.860.10 Alpha Beta › 2-Layer Sandwich › 30s Ribosomal Protein S19; Chain A › Ribosomal protein S19/S15 0.53 41.0 3.69e-01 87.9% 62.4%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.53 37.0 3.12e-01 84.5% 42.3%
2ot9A01 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.52 36.0 2.67e-01 74.1% 63.6%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 39.0 3.18e-01 86.2% 72.4%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 38.0 3.09e-01 89.7% 64.0%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.50 43.0 3.05e-01 100.0% 65.0%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 42.0 2.66e-01 93.1% 58.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989853 77.1.1.13 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR 0.79 58.0 3.58e-01 77.6% 36.8%
3528795 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.79 55.0 6.12e-01 77.6% 93.3%
1281772 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.73 52.0 5.43e-01 84.5% 81.5%
3989854 3761.1.1.4 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR 0.72 60.0 5.18e-01 89.7% 87.1%
3921177 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.72 48.0 5.00e-01 84.5% 74.5%
2905173 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.71 51.0 5.31e-01 77.6% 94.4%
1505155 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.69 50.0 5.15e-01 84.5% 80.4%
2495545 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.66 56.0 3.40e-01 100.0% 34.5%
3582142 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.63 52.0 3.73e-01 94.8% 53.0%
4955619 2007.1.2.13 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.63 54.0 3.86e-01 94.8% 56.5%
4999472 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.63 42.0 2.99e-01 70.7% 32.6%
4419934 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.60 47.0 3.21e-01 87.9% 51.8%
3973416 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.73e-01 100.0% 45.3%
3601621 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.52 40.0 2.87e-01 93.1% 37.6%
4004053 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 40.0 3.44e-01 86.2% 71.6%
3290553 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 40.0 3.55e-01 87.9% 82.4%