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NC_031255.2__YP_009303415.1__BJD60_gp32__00032

Bact-Vir

NC_031255.2__YP_009303415.1__BJD60_gp32__00032

Identity

Accession:
NC_031255 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schnabeltiervirus› Gordonia_phage_Schnabeltier

TaxID: 1821561

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-150
PDB
Domain cluster: rep: MW584206.1__QSM04889.1__PROPHIGD91-4_38__00038__D34-174
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF28078.1 best GvpU-like 38.0 2.40e-09 99.1% 83.9%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.84 50.0 6.37e-01 97.2% 97.1%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 50.0 5.99e-01 100.0% 90.7%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 45.0 5.47e-01 93.6% 86.1%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 49.0 6.03e-01 100.0% 97.2%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 45.0 5.72e-01 92.7% 95.5%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 49.0 5.55e-01 100.0% 84.1%
1nvpD02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.71 31.0 4.71e-01 70.6% 100.0%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.47e-01 100.0% 96.2%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.63 37.0 3.74e-01 96.3% 57.8%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.56 40.0 3.48e-01 73.4% 71.5%
3ztvA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 40.0 2.87e-01 79.8% 90.5%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.50 29.0 3.21e-01 87.2% 69.7%
3n54B03 3.30.300.210 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Nutrient germinant receptor protein C, domain 3 0.50 37.0 3.45e-01 94.5% 60.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3167351 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.83 49.0 5.46e-01 96.3% 73.9%
4974641 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.83 49.0 6.20e-01 96.3% 94.3%
4983255 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.82 50.0 6.06e-01 100.0% 90.7%
4575051 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.81 49.0 5.75e-01 97.2% 83.7%
3244451 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.81 50.0 5.48e-01 100.0% 75.6%
4932541 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.80 49.0 5.99e-01 100.0% 93.2%
3643592 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.80 52.0 6.19e-01 100.0% 96.0%
3645922 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.79 49.0 4.42e-01 96.3% 47.6%
166026 4.1.1.81 ↗ beta barrels › SH3 › SH3 › SH3 › LSM14 0.79 45.0 5.47e-01 93.6% 86.1%
5077846 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.78 49.0 5.86e-01 100.0% 92.0%
4029154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 52.0 5.03e-01 100.0% 62.2%
184917 4.1.1.81 ↗ beta barrels › SH3 › SH3 › SH3 › LSM14 0.77 47.0 4.92e-01 100.0% 66.3%
3712122 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.77 49.0 5.51e-01 100.0% 82.4%
4024322 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 50.0 5.92e-01 98.2% 97.3%
3277139 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.75 50.0 4.90e-01 100.0% 63.5%
4938115 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.74 48.0 5.75e-01 100.0% 97.3%
4025068 74.1.1.0 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.73 32.0 4.72e-01 70.6% 93.9%
5002088 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 47.0 5.42e-01 100.0% 88.7%
5055505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.58e-01 100.0% 91.8%
2756321 74.1.1.1 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA_gamma_C 0.71 32.0 4.47e-01 71.6% 87.0%
4975637 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.69 28.0 3.28e-01 74.3% 50.0%
4993070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 42.0 5.06e-01 84.4% 94.7%
3790010 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 44.0 4.58e-01 100.0% 73.0%
3797626 74.1.1.0 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.64 29.0 3.96e-01 72.5% 85.2%
3995211 74.1.1.2 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA 0.63 29.0 3.91e-01 72.5% 85.2%
4028824 74.1.1.0 ↗ beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.62 31.0 4.33e-01 70.6% 98.1%
4846311 1075.1.1.2 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › LptF_LptG 0.58 37.0 4.50e-01 93.6% 100.0%
5049953 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 28.0 3.00e-01 81.7% 56.7%
4447628 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.52 39.0 2.81e-01 79.8% 90.3%
4974371 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.50 44.0 3.67e-01 100.0% 69.3%