←Back to structures

NC_031260.1__YP_009303746.1__BJD48_gp47__00047

Bact-Vir

NC_031260.1__YP_009303746.1__BJD48_gp47__00047

Identity

Accession:
NC_031260 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Efquatrovirus› Enterococcus_phage_Ec-ZZ2

TaxID: 1647400

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-80
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 50.0 5.25e-01 100.0% 75.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 50.0 5.05e-01 100.0% 68.2%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.74 48.0 4.14e-01 100.0% 43.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 4.97e-01 100.0% 63.9%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 5.38e-01 100.0% 84.6%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.79e-01 100.0% 77.4%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.07e-01 100.0% 78.1%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.08e-01 100.0% 79.2%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.61 34.0 3.58e-01 100.0% 59.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 47.0 3.34e-01 100.0% 28.2%
4y7uA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 40.0 2.89e-01 75.8% 76.8%
2ejwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 41.0 3.28e-01 84.8% 83.9%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.54 41.0 3.11e-01 97.0% 30.4%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.72e-01 100.0% 73.8%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.53 45.0 3.73e-01 100.0% 58.2%
1vq0A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.53 43.0 3.06e-01 93.9% 53.6%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.35e-01 100.0% 55.3%
1j31A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.52 42.0 2.85e-01 92.4% 34.9%
7kmfJ01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 41.0 3.21e-01 90.9% 75.9%
4ec7A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 40.0 3.51e-01 87.9% 75.9%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.51 42.0 3.73e-01 97.0% 62.9%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 37.0 2.86e-01 83.3% 57.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.03e-01 100.0% 57.9%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 53.0 5.42e-01 100.0% 79.4%
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.71 53.0 5.20e-01 100.0% 74.3%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 52.0 5.19e-01 100.0% 75.7%
4335951 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 52.0 5.07e-01 100.0% 72.6%
1120986 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.68 52.0 5.25e-01 100.0% 82.1%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.68 59.0 5.88e-01 100.0% 94.3%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.49e-01 100.0% 84.3%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.67 50.0 4.64e-01 100.0% 62.4%
3173156 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.67 50.0 4.72e-01 100.0% 66.3%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 52.0 4.63e-01 100.0% 60.0%
3911065 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 50.0 4.68e-01 100.0% 67.5%
3592995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.41e-01 100.0% 81.2%
4935787 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.64 43.0 2.95e-01 71.2% 31.0%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 51.0 4.63e-01 100.0% 64.4%
5025086 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.63 46.0 4.98e-01 100.0% 92.7%
3740784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.50e-01 100.0% 70.6%
4003023 3110.1.1.2 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3-PglB_core 0.59 41.0 3.37e-01 72.7% 41.1%
3684460 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.57 51.0 4.51e-01 100.0% 85.3%
3711668 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.55 48.0 4.36e-01 98.5% 86.7%
4020511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 3.41e-01 95.5% 40.7%
3783719 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 37.0 3.10e-01 74.2% 96.7%
3581971 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.52 36.0 2.76e-01 72.7% 50.9%
3789647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.44e-01 100.0% 41.9%
3711220 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.51 42.0 4.28e-01 93.9% 92.3%
3588071 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 44.0 3.34e-01 100.0% 92.5%
5058297 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.50 35.0 2.36e-01 74.2% 54.3%