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NC_031266.1__YP_009304257.1__BJD68_gp65__00065
Bact-VirNC_031266.1__YP_009304257.1__BJD68_gp65__00065
Identity
- Accession:
- NC_031266 ↗
- Kingdom:
- phage
Quality
74.8
mean pLDDT
Taxonomy
TaxID: 1821541
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 37-122
Domain cluster:
rep: OR521087.1__WNO28610.1__SEA_MADKILLAH_26__00026__D4-67
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qdjA02 | 6.10.140.1380 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 39.0 | 4.19e-01 | 100.0% | 66.2% |
| 3k8pC01 | 1.20.58.1440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 35.0 | 3.31e-01 | 98.8% | 42.9% |
| 3nb0B03 | 6.10.260.10 | Special › Helix non-globular › F1FO ATP Synthase › | 0.63 | 45.0 | 4.58e-01 | 95.3% | 76.2% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.60 | 51.0 | 4.59e-01 | 90.7% | 67.5% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 50.0 | 4.40e-01 | 100.0% | 78.7% |
| 2pnqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 45.0 | 2.95e-01 | 91.9% | 34.8% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 39.0 | 3.61e-01 | 97.7% | 60.6% |
| 5awwY00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.53 | 48.0 | 3.05e-01 | 100.0% | 82.3% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 39.0 | 3.65e-01 | 98.8% | 63.2% |
| 6liuC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 39.0 | 3.48e-01 | 83.7% | 56.9% |
| 3rkxA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 41.0 | 3.18e-01 | 89.5% | 61.5% |
| 4mt1A07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.50 | 38.0 | 3.64e-01 | 84.9% | 68.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025349 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.64 | 39.0 | 3.37e-01 | 73.3% | 40.8% |
| 4955506 | 2003.1.5.444 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1156 | 0.60 | 52.0 | 3.23e-01 | 96.5% | 18.2% |
| 4248927 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.60 | 50.0 | 4.38e-01 | 89.5% | 61.6% |
| 3922598 | 4120.1.1.43 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TSTD2_N | 0.58 | 42.0 | 4.66e-01 | 81.4% | 100.0% |
| 4164698 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.57 | 42.0 | 3.92e-01 | 100.0% | 61.8% |
| 4876714 | 4070.1.1.1 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 | 0.57 | 49.0 | 3.78e-01 | 98.8% | 88.2% |
| 4972215 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.55 | 44.0 | 3.29e-01 | 90.7% | 35.2% |
| 4618205 | 604.1.1.150 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 | 0.54 | 39.0 | 3.47e-01 | 98.8% | 53.3% |
| 4375528 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.54 | 49.0 | 4.58e-01 | 98.8% | 94.3% |
| 3956629 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.54 | 41.0 | 3.86e-01 | 80.2% | 81.9% |
| 4573073 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.54 | 48.0 | 4.42e-01 | 98.8% | 88.2% |
| 5038479 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.54 | 48.0 | 3.47e-01 | 100.0% | 38.8% |
| 3737182 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.54 | 48.0 | 4.00e-01 | 98.8% | 86.0% |
| 3354260 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.54 | 44.0 | 2.94e-01 | 89.5% | 34.2% |
| 3439468 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.54 | 42.0 | 3.08e-01 | 87.2% | 42.7% |
| 3667031 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 39.0 | 4.20e-01 | 87.2% | 88.0% |
| 3205253 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 37.0 | 2.91e-01 | 93.0% | 36.5% |
| 4386701 | 310.2.1.35 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954 | 0.53 | 43.0 | 3.57e-01 | 86.0% | 51.0% |
| 4200413 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.53 | 47.0 | 4.44e-01 | 100.0% | 86.7% |
| 3385696 | 854.1.1.0 ↗ | extended segments › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE | 0.53 | 36.0 | 3.75e-01 | 72.1% | 77.2% |
| 3176989 | 601.19.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 | 0.52 | 39.0 | 3.16e-01 | 98.8% | 41.9% |
| 4442629 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.52 | 44.0 | 3.22e-01 | 95.3% | 57.9% |
| 3257423 | 2498.1.1.92 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF7906 | 0.52 | 40.0 | 3.00e-01 | 86.0% | 98.3% |
| 5042930 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.51 | 45.0 | 3.24e-01 | 97.7% | 54.8% |
| 3611776 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.51 | 45.0 | 3.89e-01 | 100.0% | 62.9% |
| 4015527 | 7022.1.1.0 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein | 0.51 | 43.0 | 3.69e-01 | 87.2% | 88.0% |
| 3990521 | 5050.1.1.31 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr | 0.51 | 41.0 | 3.22e-01 | 86.0% | 72.6% |
| 3865283 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.50 | 44.0 | 3.27e-01 | 100.0% | 90.2% |
| 3328712 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.50 | 40.0 | 2.94e-01 | 86.0% | 82.2% |
| 3988581 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.50 | 43.0 | 4.26e-01 | 98.8% | 86.7% |