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NC_031274.1__YP_009304517.1__BJD45_gp38__00038

Bact-Vir

NC_031274.1__YP_009304517.1__BJD45_gp38__00038

Identity

Accession:
NC_031274 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Paundecimvirus› Pseudomonas_phage_O4

TaxID: 1784982

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-96
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 50.0 5.80e-01 87.4% 84.4%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 49.0 4.83e-01 81.6% 65.2%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 44.0 5.06e-01 83.9% 83.1%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 52.0 5.62e-01 87.4% 90.5%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 4.50e-01 79.3% 93.9%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 55.0 5.12e-01 100.0% 85.2%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.58 38.0 3.57e-01 82.8% 52.7%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 38.0 3.43e-01 70.1% 82.1%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 38.0 3.17e-01 74.7% 88.9%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 38.0 3.22e-01 74.7% 81.5%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 38.0 2.68e-01 77.0% 28.5%
4w78G00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 3.03e-01 72.4% 89.0%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 39.0 2.86e-01 80.5% 87.7%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 35.0 2.94e-01 72.4% 55.3%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3516333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 41.0 5.12e-01 82.8% 85.5%
3706786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 51.0 5.48e-01 97.7% 85.3%
3594811 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.74e-01 79.3% 98.5%
3484620 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 63.0 6.18e-01 98.9% 94.7%
3253266 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 4.95e-01 87.4% 66.7%
3953498 4.1.1.439 ↗ beta barrels › SH3 › SH3 › SH3 › PF26205 0.69 48.0 5.13e-01 80.5% 84.0%
3669492 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 46.0 3.89e-01 83.9% 42.9%
3482288 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.80e-01 90.8% 94.9%
3583602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.53e-01 85.1% 87.1%
3253267 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.70e-01 81.6% 72.9%
4963445 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.67 52.0 5.26e-01 94.3% 84.7%
3707346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.00e-01 86.2% 80.7%
3319789 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.65 47.0 4.80e-01 85.1% 76.5%
3196131 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.65 53.0 5.18e-01 87.4% 87.4%
3881192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 57.0 4.55e-01 100.0% 70.6%
3683669 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 53.0 5.06e-01 97.7% 100.0%
3673789 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.61 38.0 4.17e-01 70.1% 77.9%
3786271 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 42.0 3.39e-01 70.1% 69.4%
3907178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.80e-01 92.0% 81.9%
145843 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.61 55.0 5.12e-01 100.0% 85.2%
3497683 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.59 48.0 4.01e-01 94.3% 51.3%
3487845 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 47.0 3.18e-01 86.2% 33.5%
3988703 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 36.0 4.14e-01 70.1% 84.6%
3173646 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 39.0 3.19e-01 72.4% 83.0%
5022323 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.20e-01 74.7% 95.4%
3677761 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 40.0 3.58e-01 86.2% 53.6%
3229356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.52e-01 95.4% 89.5%
4066014 236.1.1.1 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N 0.54 35.0 2.81e-01 96.6% 32.6%
None — 0.54 36.0 2.65e-01 82.8% 23.5%
3598651 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 45.0 3.07e-01 95.4% 34.4%
2647505 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.52 47.0 3.45e-01 100.0% 94.9%
3498599 2.3.1.1 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP 0.52 40.0 3.17e-01 81.6% 56.5%
3268617 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 45.0 3.51e-01 96.6% 92.6%
4131098 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.51 35.0 3.38e-01 70.1% 69.0%