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NC_031274.1__YP_009304527.1__BJD45_gp48__00048
Bact-VirNC_031274.1__YP_009304527.1__BJD45_gp48__00048
Identity
- Accession:
- NC_031274 ↗
- Kingdom:
- phage
Quality
74.7
mean pLDDT
Taxonomy
TaxID: 1784982
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-57
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.71 | 59.0 | 4.69e-01 | 100.0% | 96.5% |
| 3u02A01 | 3.30.70.2200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 54.0 | 3.96e-01 | 84.6% | 99.3% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 57.0 | 4.73e-01 | 94.2% | 92.9% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.69 | 52.0 | 5.35e-01 | 86.5% | 100.0% |
| 1y9qA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.69 | 45.0 | 3.73e-01 | 84.6% | 37.6% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.68 | 57.0 | 5.02e-01 | 98.1% | 81.7% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.68 | 53.0 | 4.55e-01 | 92.3% | 95.7% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.68 | 51.0 | 4.30e-01 | 100.0% | 46.8% |
| 1w99A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.66 | 53.0 | 3.58e-01 | 88.5% | 35.1% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.65 | 56.0 | 4.72e-01 | 100.0% | 91.3% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.65 | 55.0 | 3.66e-01 | 100.0% | 66.9% |
| 2j82A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.65 | 54.0 | 3.67e-01 | 100.0% | 65.6% |
| 2cw8A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.64 | 52.0 | 3.64e-01 | 90.4% | 40.2% |
| 4jcwA02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.63 | 49.0 | 4.20e-01 | 100.0% | 51.1% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.63 | 43.0 | 3.03e-01 | 71.2% | 95.8% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.62 | 47.0 | 3.37e-01 | 88.5% | 39.2% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.62 | 47.0 | 4.38e-01 | 100.0% | 63.4% |
| 2j8bA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.61 | 52.0 | 4.61e-01 | 100.0% | 65.4% |
| 1wfjA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.61 | 52.0 | 4.03e-01 | 100.0% | 46.8% |
| 2olsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.61 | 53.0 | 3.88e-01 | 100.0% | 93.7% |
| 5bxrA01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.61 | 44.0 | 3.26e-01 | 88.5% | 29.2% |
| 3fjsC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 47.0 | 3.73e-01 | 84.6% | 50.5% |
| 2cg8B02 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.60 | 51.0 | 3.91e-01 | 100.0% | 90.2% |
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 48.0 | 2.97e-01 | 92.3% | 79.3% |
| 2dt8A01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 49.0 | 3.57e-01 | 96.2% | 97.3% |
| 2dmhA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.59 | 49.0 | 3.74e-01 | 100.0% | 43.6% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 48.0 | 3.51e-01 | 96.2% | 79.9% |
| 5wfiA01 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 45.0 | 3.41e-01 | 86.5% | 44.6% |
| 3fysA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 45.0 | 3.40e-01 | 100.0% | 45.8% |
| 2uytA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 45.0 | 3.06e-01 | 100.0% | 96.2% |
| 3n6xA03 | 3.30.1490.270 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 37.0 | 3.69e-01 | 76.9% | 69.6% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.53 | 44.0 | 3.98e-01 | 100.0% | 68.4% |
| 1nf2A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.53 | 44.0 | 3.62e-01 | 100.0% | 79.2% |
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 44.0 | 3.07e-01 | 96.2% | 59.6% |
| 4jf6A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 41.0 | 2.85e-01 | 100.0% | 64.9% |
| 2pytA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 39.0 | 3.05e-01 | 86.5% | 42.2% |
| 3qfhC02 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.52 | 45.0 | 2.74e-01 | 98.1% | 31.6% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.51 | 36.0 | 2.58e-01 | 75.0% | 95.5% |
| 2yvlA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.51 | 44.0 | 4.32e-01 | 98.1% | 89.7% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 44.0 | 3.34e-01 | 100.0% | 58.3% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5059796 | 4326.1.1.0 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like | 0.76 | 66.0 | 6.08e-01 | 100.0% | 75.4% |
| 3280334 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.74 | 66.0 | 4.44e-01 | 100.0% | 94.7% |
| 3966318 | 223.1.1.84 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF | 0.73 | 47.0 | 2.75e-01 | 71.2% | 8.2% |
| 3176986 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.70 | 53.0 | 4.62e-01 | 96.2% | 51.8% |
| 5066457 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.70 | 51.0 | 4.85e-01 | 80.8% | 100.0% |
| 3816857 | 223.1.1.84 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF | 0.70 | 44.0 | 2.63e-01 | 71.2% | 8.4% |
| 2496895 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 60.0 | 4.95e-01 | 100.0% | 55.7% |
| 3723733 | 223.1.1.84 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF | 0.69 | 48.0 | 2.84e-01 | 73.1% | 46.0% |
| 3288892 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.69 | 54.0 | 5.71e-01 | 100.0% | 100.0% |
| 5014950 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 58.0 | 4.22e-01 | 100.0% | 52.9% |
| 5066439 | 304.3.1.14 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C | 0.68 | 51.0 | 4.82e-01 | 84.6% | 100.0% |
| 4952123 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.68 | 59.0 | 5.67e-01 | 100.0% | 90.0% |
| 5035636 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.67 | 53.0 | 4.46e-01 | 94.2% | 91.0% |
| None | — | 0.66 | 58.0 | 3.30e-01 | 100.0% | 9.5% | |
| 5076676 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.66 | 48.0 | 4.59e-01 | 82.7% | 100.0% |
| None | — | 0.66 | 58.0 | 3.27e-01 | 100.0% | 9.0% | |
| 3260247 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.64 | 39.0 | 3.37e-01 | 71.2% | 37.3% |
| 3714597 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.64 | 55.0 | 4.07e-01 | 100.0% | 73.3% |
| 3495764 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.64 | 49.0 | 3.36e-01 | 84.6% | 37.3% |
| 5031225 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 43.0 | 3.36e-01 | 71.2% | 38.3% |
| 3391377 | 11.1.1.37 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 | 0.63 | 55.0 | 4.05e-01 | 100.0% | 55.0% |
| 3863856 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.63 | 51.0 | 4.44e-01 | 98.1% | 58.7% |
| 3746678 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.63 | 51.0 | 4.53e-01 | 98.1% | 62.7% |
| 3962617 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.63 | 48.0 | 3.22e-01 | 84.6% | 32.7% |
| 3607139 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.62 | 48.0 | 3.07e-01 | 86.5% | 28.6% |
| 3237024 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 45.0 | 3.57e-01 | 98.1% | 35.8% |
| 3875549 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.60 | 46.0 | 3.14e-01 | 84.6% | 34.4% |
| 3267853 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.60 | 46.0 | 3.04e-01 | 84.6% | 30.5% |
| 3621341 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.60 | 48.0 | 4.36e-01 | 92.3% | 98.7% |
| 5075866 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 48.0 | 4.35e-01 | 100.0% | 98.8% |
| 3985028 | 213.1.1.103 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Mom | 0.59 | 47.0 | 3.25e-01 | 92.3% | 61.9% |
| 3907235 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.59 | 46.0 | 3.05e-01 | 86.5% | 31.1% |
| 5017559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 43.0 | 4.07e-01 | 80.8% | 98.5% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.59 | 46.0 | 3.02e-01 | 86.5% | 31.6% |
| 3879988 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.59 | 46.0 | 3.04e-01 | 86.5% | 32.6% |
| 3476653 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.56 | 47.0 | 2.98e-01 | 98.1% | 20.1% |
| 3988217 | 241.12.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like | 0.56 | 49.0 | 3.34e-01 | 100.0% | 34.0% |
| 4534120 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.56 | 42.0 | 2.76e-01 | 80.8% | 75.3% |
| 3874516 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.56 | 44.0 | 2.66e-01 | 86.5% | 14.4% |
| 3252861 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.56 | 46.0 | 3.11e-01 | 96.2% | 71.6% |
| 3336122 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 45.0 | 3.47e-01 | 94.2% | 63.2% |
| 3583261 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.54 | 41.0 | 3.86e-01 | 82.7% | 100.0% |
| 4316618 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.54 | 45.0 | 2.83e-01 | 100.0% | 19.5% |
| 3958656 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.54 | 44.0 | 3.41e-01 | 96.2% | 93.8% |
| 3587556 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.54 | 46.0 | 4.25e-01 | 100.0% | 87.1% |
| 3281602 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.54 | 44.0 | 4.53e-01 | 94.2% | 100.0% |
| 3784535 | 109.4.1.1973 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28685 | 0.54 | 39.0 | 2.25e-01 | 78.8% | 16.3% |
| 5038375 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.53 | 41.0 | 2.82e-01 | 88.5% | 24.5% |
| 4488855 | 275.1.1.5 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC | 0.53 | 42.0 | 3.60e-01 | 88.5% | 82.4% |
| 4943640 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 44.0 | 3.20e-01 | 90.4% | 63.2% |
| 908 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.52 | 41.0 | 3.72e-01 | 96.2% | 91.3% |
| 3829044 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.52 | 42.0 | 2.72e-01 | 98.1% | 32.8% |
| 3637401 | 4081.1.1.8 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 | 0.52 | 42.0 | 2.83e-01 | 94.2% | 50.5% |
| 4947520 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.52 | 41.0 | 2.92e-01 | 86.5% | 90.0% |
| 4021062 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.51 | 41.0 | 3.98e-01 | 100.0% | 100.0% |
| 3598422 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.50 | 39.0 | 3.33e-01 | 92.3% | 82.0% |