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NC_031280.1__YP_009304751.1__BJD49_gp008__00008

Bact-Vir

NC_031280.1__YP_009304751.1__BJD49_gp008__00008

Identity

Accession:
NC_031280 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saclayvirus› Acinetobacter_phage_vB_AbaM_phiAbaA1

TaxID: 1605379

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.70 56.0 4.79e-01 90.9% 66.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 4.74e-01 81.8% 95.8%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 49.0 4.55e-01 81.8% 79.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 4.61e-01 85.5% 88.2%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.54e-01 83.6% 97.1%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.45e-01 92.7% 79.3%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 42.0 3.49e-01 72.7% 80.4%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 45.0 3.95e-01 80.0% 65.5%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.62 46.0 3.26e-01 85.5% 34.7%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 48.0 4.38e-01 90.9% 100.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 3.68e-01 90.9% 63.6%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.65e-01 94.5% 97.2%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 48.0 3.86e-01 92.7% 53.9%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 45.0 3.52e-01 83.6% 74.6%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 46.0 3.94e-01 90.9% 100.0%
1lvoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 52.0 4.46e-01 100.0% 62.5%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 45.0 3.78e-01 90.9% 95.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.12e-01 89.1% 87.0%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 45.0 3.53e-01 90.9% 97.8%
4rudA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 39.0 3.90e-01 72.7% 67.2%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 44.0 3.72e-01 90.9% 94.3%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.20e-01 72.7% 77.0%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 44.0 2.76e-01 98.2% 25.1%
4pz6A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.55 43.0 3.01e-01 96.4% 71.6%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 37.0 2.92e-01 70.9% 65.9%
4ag4A02 2.60.120.1190 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.20e-01 94.5% 75.7%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.55 37.0 3.03e-01 72.7% 85.7%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 42.0 3.18e-01 94.5% 52.0%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 46.0 3.97e-01 100.0% 98.9%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 41.0 3.52e-01 90.9% 65.7%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 3.80e-01 100.0% 79.8%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.53 43.0 3.79e-01 96.4% 100.0%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.53 44.0 3.68e-01 100.0% 58.7%
5wxuA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.15e-01 94.5% 36.4%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.53 40.0 3.37e-01 87.3% 76.4%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 2.99e-01 94.5% 30.3%
2y24A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 40.0 3.40e-01 89.1% 84.1%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 37.0 3.52e-01 72.7% 63.6%
5mybA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.49e-01 89.1% 77.1%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 42.0 2.65e-01 92.7% 30.7%
3kyhC01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.52 41.0 2.83e-01 96.4% 72.9%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 35.0 2.48e-01 72.7% 67.6%
4yokA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.51 39.0 3.38e-01 87.3% 71.3%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.56e-01 98.2% 86.3%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.79e-01 98.2% 87.2%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.50 37.0 2.99e-01 89.1% 74.5%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 58.0 5.23e-01 90.9% 98.7%
5031647 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 54.0 5.06e-01 85.5% 91.4%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.70 53.0 4.48e-01 83.6% 72.6%
4283898 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.68 50.0 4.25e-01 81.8% 63.2%
4152716 3292.1.1.1 ↗ a+b complex topology › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain › Adenine_deam_C 0.67 53.0 3.61e-01 87.3% 94.1%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 51.0 4.74e-01 83.6% 88.6%
3279212 1.1.7.23 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 0.66 55.0 4.50e-01 96.4% 90.0%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.65 50.0 4.00e-01 87.3% 64.2%
3414063 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.65 47.0 4.78e-01 78.2% 100.0%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.64 47.0 4.56e-01 81.8% 98.5%
4337472 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.64 47.0 4.04e-01 81.8% 63.2%
3615787 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 53.0 3.53e-01 94.5% 75.1%
3936726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.60e-01 78.2% 100.0%
4398429 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.63 47.0 4.28e-01 83.6% 78.8%
3828371 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 53.0 4.65e-01 96.4% 89.4%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.63 48.0 4.71e-01 83.6% 100.0%
4492958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 52.0 4.31e-01 96.4% 95.2%
4958339 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.61 50.0 4.16e-01 96.4% 75.5%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.61 45.0 4.45e-01 81.8% 100.0%
3166677 3792.1.1.0 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain 0.60 45.0 4.00e-01 83.6% 65.9%
3970225 1.1.13.68 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27125 0.60 40.0 3.52e-01 70.9% 61.1%
3898106 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 51.0 3.94e-01 98.2% 65.4%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.75e-01 96.4% 92.9%
3559960 2006.1.6.66 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.60 49.0 4.59e-01 96.4% 97.1%
4864011 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.59 47.0 3.98e-01 94.5% 91.4%
3552831 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.59 44.0 3.72e-01 87.3% 99.0%
4155258 11.1.4.115 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF6795 0.59 45.0 3.85e-01 87.3% 71.6%
3251253 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 48.0 3.39e-01 98.2% 93.5%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 46.0 4.22e-01 94.5% 91.3%
4017413 102.1.1.20 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IGR 0.58 42.0 3.00e-01 80.0% 40.8%
3434219 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.57 47.0 4.05e-01 98.2% 82.1%
5057694 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 44.0 3.86e-01 96.4% 100.0%
3879755 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.57 46.0 3.84e-01 96.4% 81.0%
3931783 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.56 43.0 3.74e-01 89.1% 96.8%
3861637 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 44.0 3.38e-01 90.9% 86.4%
3275151 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 40.0 3.04e-01 78.2% 96.6%
2418749 11.1.4.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Transthyretin 0.55 39.0 3.14e-01 78.2% 60.2%
3320319 4.1.1.152 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1262 0.54 43.0 3.40e-01 96.4% 60.7%
4945633 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.54 44.0 3.05e-01 100.0% 31.3%
4929404 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 42.0 3.59e-01 96.4% 98.1%
1253342 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.53 37.0 3.58e-01 78.2% 85.5%
5027590 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 42.0 3.30e-01 94.5% 43.7%
3846497 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 43.0 3.69e-01 100.0% 79.0%
3911651 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 43.0 2.68e-01 94.5% 28.4%
3802001 207.1.1.174 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3 0.52 41.0 2.48e-01 98.2% 18.6%
4160949 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.53e-01 94.5% 82.8%
3717225 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 40.0 3.45e-01 92.7% 93.0%
3583509 10.32.1.172 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DDR1-2_DS-like 0.51 40.0 2.97e-01 92.7% 98.9%
3478976 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.50 34.0 2.83e-01 72.7% 85.2%
3817275 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 41.0 3.30e-01 94.5% 66.4%
3827433 10.12.1.16 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.50 39.0 2.72e-01 94.5% 30.8%