←Back to structures

NC_031900.1__YP_009320442.1__BOQ05_gp009__00009

Bact-Vir

Identity

Accession:: NC_031900 ↗
Kingdom:: phage

Quality

55.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Potamoivirus› Synechococcus_phage_S-CAM4

TaxID: 1883367

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 490-586

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5or3A00	1.10.1280.10	Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase	0.52	45.0	3.09e-01	96.9%	86.5%
1ra6A02	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.50	35.0	3.45e-01	73.2%	66.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4049800	181.1.1.5 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SMP	0.58	38.0	3.58e-01	72.2%	52.0%
3564445	101.1.10.6 ↗	alpha arrays › HTH › HTH › Cyclin-like › RB_A	0.56	41.0	3.20e-01	75.3%	80.0%
3486310	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.51	40.0	2.84e-01	83.5%	56.1%

D2 medium residues 587-659

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4eekA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.61	38.0	3.94e-01	94.5%	66.7%
1zu4A01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.58	47.0	4.46e-01	100.0%	77.0%
3dd7C00	1.20.120.1870	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain	0.56	43.0	3.71e-01	94.5%	50.8%
4cs9B02	1.20.120.1350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain	0.54	40.0	3.56e-01	79.5%	74.8%
7lhsB01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.54	45.0	3.37e-01	95.9%	73.9%
3juiA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.54	41.0	3.17e-01	83.6%	64.9%
3jruA01	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.53	43.0	3.41e-01	93.2%	76.1%
3wnzA02	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.52	39.0	3.58e-01	91.8%	63.0%
1f5qB01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.52	44.0	3.95e-01	100.0%	89.9%
2gfhA02	1.20.120.710	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain	0.51	40.0	3.83e-01	94.5%	74.4%
1w98B02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.51	44.0	3.84e-01	100.0%	86.8%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3997947	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.70	45.0	5.25e-01	95.9%	96.0%
3909922	101.1.1.12 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2	0.61	40.0	4.63e-01	94.5%	98.0%
3901880	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.56	35.0	3.74e-01	94.5%	72.3%
5069773	102.1.1.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like	0.54	36.0	3.45e-01	94.5%	58.8%
4634670	5067.1.1.1 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ACR_tran	0.52	44.0	3.23e-01	100.0%	68.4%

D3 medium residues 692-781

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hfqA00	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.51	37.0	2.45e-01	74.4%	86.8%
3riqA00	2.160.20.20	Mainly Beta › 3 Solenoid › Pectate Lyase C-like ›	0.51	40.0	2.50e-01	85.6%	73.6%
2b4wA00	2.115.10.20	Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43	0.50	34.0	2.47e-01	71.1%	94.5%
1ospO02	3.90.930.1	Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 ›	0.50	40.0	3.50e-01	88.9%	99.3%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5066039	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.57	48.0	3.08e-01	95.6%	60.8%
5028909	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.56	45.0	2.86e-01	87.8%	74.1%
3921178	5.1.4.272 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2	0.56	41.0	2.77e-01	76.7%	65.9%
4324611	2008.1.1.166 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_XcyI	0.55	44.0	3.01e-01	86.7%	56.8%
4030008	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.51	35.0	2.41e-01	71.1%	87.0%
3246524	5.1.4.170 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EML_2	0.51	41.0	2.88e-01	88.9%	70.5%