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NC_031900.1__YP_009320538.1__BOQ05_gp159__00105

Bact-Vir

NC_031900.1__YP_009320538.1__BOQ05_gp159__00105

Identity

Accession:
NC_031900 ↗
Kingdom:
phage

Quality

67.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Potamoivirus› Synechococcus_phage_S-CAM4

TaxID: 1883367

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 115-299
PDB
D2 medium residues 1-61
PDB
Domain cluster: rep: LacPavin_0818_WC50_scaffold_3810_prodigal-single.1__X__X__00013__D8-52
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 51.0 3.20e-01 93.4% 42.2%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.61 44.0 4.63e-01 88.5% 87.3%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 51.0 3.17e-01 93.4% 37.5%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 48.0 3.06e-01 98.4% 53.0%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 47.0 3.60e-01 100.0% 70.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3528795 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.71 50.0 5.62e-01 77.0% 100.0%
3921177 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.66 46.0 4.82e-01 85.2% 80.0%
5002640 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.65 44.0 4.68e-01 70.5% 100.0%
3204729 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 51.0 3.03e-01 93.4% 49.6%
1281772 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.61 43.0 4.54e-01 88.5% 85.2%
3594089 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 52.0 3.25e-01 95.1% 43.6%
3737735 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 51.0 3.14e-01 93.4% 37.8%
1505155 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.61 45.0 4.63e-01 85.2% 85.7%
4999472 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.60 42.0 3.02e-01 73.8% 88.4%
3989853 77.1.1.13 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR 0.60 51.0 3.34e-01 100.0% 65.1%
3487286 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 50.0 3.15e-01 95.1% 40.8%
3272442 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 50.0 3.18e-01 95.1% 48.6%
3621466 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 51.0 3.11e-01 95.1% 56.0%
3814705 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 50.0 3.13e-01 95.1% 42.3%
4011568 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 51.0 3.19e-01 96.7% 45.1%
2495545 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.59 54.0 3.21e-01 100.0% 19.8%
3709028 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 50.0 3.35e-01 95.1% 72.0%
3940305 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 50.0 3.44e-01 96.7% 80.5%
4419934 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.58 48.0 3.30e-01 93.4% 62.7%
4955619 2007.1.2.13 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.58 50.0 3.71e-01 100.0% 79.4%
3506791 2.1.1.69 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 0.58 41.0 3.20e-01 77.0% 78.6%
3660442 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 48.0 3.08e-01 95.1% 38.1%
None — 0.51 42.0 2.58e-01 96.7% 53.9%
4795566 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 37.0 3.65e-01 100.0% 71.6%