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NC_031906.1__YP_009321272.1__BOW87_gp009__00009
Bact-VirNC_031906.1__YP_009321272.1__BOW87_gp009__00009
Identity
- Accession:
- NC_031906 ↗
- Kingdom:
- phage
Quality
52.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Charybdisvirus›
Synechococcus_phage_S-CAM3
TaxID: 1883366
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-98
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eduA01 | 1.10.150.280 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AF1531-like domain | 0.61 | 31.0 | 3.26e-01 | 82.8% | 50.6% |
| 4im7A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 47.0 | 3.56e-01 | 89.7% | 39.9% |
| 7yugA01 | 1.10.10.2590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain | 0.54 | 37.0 | 3.41e-01 | 71.3% | 54.9% |
| 3ipiA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 39.0 | 2.79e-01 | 87.4% | 27.2% |
| 3ucaA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 39.0 | 2.80e-01 | 98.9% | 27.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3637892 | 2007.9.1.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › PF29907 | 0.58 | 44.0 | 3.50e-01 | 80.5% | 95.4% |
| 3197148 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.55 | 37.0 | 3.24e-01 | 70.1% | 49.6% |
| 3287880 | 148.1.3.236 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31033 | 0.54 | 41.0 | 3.60e-01 | 80.5% | 66.9% |
| 3857450 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.50 | 39.0 | 3.17e-01 | 82.8% | 45.8% |
D2
high
residues 730-862
Domain cluster:
rep: LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00010__D277-437
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ofgB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 39.0 | 4.67e-01 | 95.5% | 89.7% |
| 1fu0A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.64 | 41.0 | 4.96e-01 | 93.2% | 98.9% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.61 | 36.0 | 4.30e-01 | 94.7% | 91.6% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.59 | 32.0 | 3.92e-01 | 78.9% | 84.0% |
| 2d9oA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 38.0 | 4.25e-01 | 97.7% | 86.0% |
| 6zxbA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 39.0 | 3.87e-01 | 94.7% | 65.3% |
| 1vk3A04 | 3.30.70.1670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formylglycinamide ribonucleotide amidotransferase, C-terminal domain | 0.56 | 36.0 | 4.14e-01 | 94.7% | 89.6% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.55 | 33.0 | 3.83e-01 | 94.7% | 83.0% |
| 2dgyA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 21.0 | 2.59e-01 | 88.7% | 51.9% |
| 1xffA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 41.0 | 3.48e-01 | 87.2% | 99.2% |
| 1pvwA00 | 3.90.870.10 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase | 0.50 | 40.0 | 3.48e-01 | 88.0% | 91.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3285016 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.61 | 37.0 | 4.41e-01 | 94.7% | 88.9% |
| 3962561 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 39.0 | 3.90e-01 | 94.7% | 61.4% |
| 3793391 | 304.28.1.30 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SCVP | 0.59 | 40.0 | 4.39e-01 | 94.7% | 84.5% |
| 3688359 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.58 | 41.0 | 3.37e-01 | 72.9% | 77.1% |
| 3598117 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.58 | 43.0 | 4.73e-01 | 100.0% | 93.6% |
| 4945409 | 206.1.3.26 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 | 0.57 | 40.0 | 3.38e-01 | 72.9% | 96.0% |
| 3366870 | 304.28.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › NPC1_MLD | 0.56 | 49.0 | 4.03e-01 | 95.5% | 84.1% |
| 4955225 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.56 | 44.0 | 3.58e-01 | 84.2% | 94.5% |
| 3391210 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.55 | 36.0 | 3.85e-01 | 94.7% | 77.3% |
| 3442371 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.55 | 30.0 | 3.65e-01 | 94.7% | 82.4% |
| 4945149 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.54 | 39.0 | 2.62e-01 | 96.2% | 18.7% |
| 3700778 | 304.159.1.0 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB | 0.54 | 40.0 | 4.24e-01 | 94.7% | 90.4% |
| 3830567 | 3291.1.1.91 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › LUC7 | 0.54 | 43.0 | 3.52e-01 | 83.5% | 61.7% |
| 4937979 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.52 | 44.0 | 4.48e-01 | 95.5% | 91.1% |
| 3769768 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.52 | 42.0 | 3.01e-01 | 85.7% | 55.6% |