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NC_031906.1__YP_009321298.1__BOW87_gp223__00035
Bact-VirNC_031906.1__YP_009321298.1__BOW87_gp223__00035
Identity
- Accession:
- NC_031906 ↗
- Kingdom:
- phage
Quality
92.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Charybdisvirus›
Synechococcus_phage_S-CAM3
TaxID: 1883366
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-113
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.67 | 48.0 | 5.40e-01 | 89.9% | 98.5% |
| 1vw4U00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.64 | 42.0 | 4.38e-01 | 92.1% | 73.2% |
| 3go9A01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.62 | 54.0 | 4.06e-01 | 100.0% | 76.3% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.62 | 49.0 | 4.95e-01 | 92.1% | 86.8% |
| 6spbZ00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.61 | 39.0 | 4.54e-01 | 88.8% | 100.0% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 49.0 | 4.86e-01 | 92.1% | 97.9% |
| 3bn7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 50.0 | 4.85e-01 | 94.4% | 99.0% |
| 2fiuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 48.0 | 4.77e-01 | 93.3% | 100.0% |
| 3fmbA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 48.0 | 4.72e-01 | 93.3% | 98.0% |
| 1q2lA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 50.0 | 3.81e-01 | 100.0% | 66.5% |
| 3oc2A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.58 | 50.0 | 4.00e-01 | 95.5% | 65.3% |
| 1qm9A02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 46.0 | 4.64e-01 | 93.3% | 86.5% |
| 2kviA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 43.0 | 4.65e-01 | 93.3% | 94.8% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.56 | 43.0 | 4.48e-01 | 100.0% | 89.0% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.55 | 47.0 | 4.08e-01 | 100.0% | 69.7% |
| 2wbrA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 43.0 | 4.31e-01 | 94.4% | 84.3% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 45.0 | 4.39e-01 | 94.4% | 99.0% |
| 3c9gA01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.55 | 47.0 | 4.29e-01 | 98.9% | 91.3% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 44.0 | 4.59e-01 | 94.4% | 97.6% |
| 1wf1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 42.0 | 4.22e-01 | 96.6% | 82.2% |
| 1weyA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 44.0 | 4.21e-01 | 94.4% | 77.9% |
| 2kyzA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 4.13e-01 | 91.0% | 100.0% |
| 1bhpA00 | 3.30.1350.10 | Alpha Beta › 2-Layer Sandwich › Crambin › Thionin-like | 0.53 | 24.0 | 3.10e-01 | 80.9% | 77.8% |
| 2re1A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 39.0 | 4.16e-01 | 88.8% | 100.0% |
| 5zneA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 4.15e-01 | 89.9% | 98.6% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 45.0 | 4.42e-01 | 100.0% | 96.0% |
| 1u0sA00 | 3.30.70.1110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Histidine kinase CheA-like, P2 response regulator-binding domain | 0.51 | 40.0 | 4.14e-01 | 88.8% | 96.5% |
| 6j6ga00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 42.0 | 4.31e-01 | 95.5% | 95.2% |
| 2qmwA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 39.0 | 4.10e-01 | 88.8% | 100.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3965629 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.66 | 48.0 | 5.21e-01 | 87.6% | 97.1% |
| 2755152 | 308.2.1.0 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain | 0.65 | 49.0 | 5.36e-01 | 92.1% | 98.6% |
| 3838034 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.65 | 53.0 | 5.35e-01 | 92.1% | 87.8% |
| 3972612 | 308.1.1.0 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related | 0.65 | 50.0 | 4.94e-01 | 94.4% | 77.9% |
| 3503894 | 308.1.1.2 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS | 0.62 | 51.0 | 5.40e-01 | 92.1% | 100.0% |
| 4021062 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.62 | 41.0 | 4.72e-01 | 97.8% | 100.0% |
| 3578498 | 304.120.1.10 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF25904 | 0.60 | 45.0 | 4.93e-01 | 94.4% | 100.0% |
| 166595 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.59 | 50.0 | 4.87e-01 | 94.4% | 100.0% |
| 3207719 | 2002.1.1.262 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SGT1 | 0.59 | 52.0 | 4.22e-01 | 100.0% | 62.9% |
| 3477586 | 304.120.1.10 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF25904 | 0.59 | 44.0 | 4.75e-01 | 94.4% | 96.0% |
| 170105 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.59 | 48.0 | 4.73e-01 | 93.3% | 99.0% |
| 3703744 | 304.34.1.0 ↗ | a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases | 0.58 | 52.0 | 3.91e-01 | 100.0% | 90.5% |
| 3281317 | 308.2.1.0 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain | 0.58 | 44.0 | 4.73e-01 | 88.8% | 98.7% |
| 5022996 | 304.28.1.13 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › MMPL | 0.58 | 49.0 | 4.47e-01 | 98.9% | 98.4% |
| 3936869 | 304.8.1.72 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP | 0.57 | 48.0 | 4.72e-01 | 98.9% | 97.0% |
| 3615538 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 47.0 | 4.72e-01 | 94.4% | 94.4% |
| 3957032 | 308.2.1.0 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain | 0.56 | 44.0 | 4.59e-01 | 95.5% | 98.8% |
| 3802360 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.55 | 45.0 | 4.27e-01 | 94.4% | 80.0% |
| 4350092 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.55 | 46.0 | 3.61e-01 | 93.3% | 98.5% |
| 3286853 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.55 | 44.0 | 4.57e-01 | 92.1% | 98.8% |
| 3698721 | 321.2.1.1 ↗ | a+b two layers › Glutamine synthetase-like › C-terminal domain in urocanase › C-terminal domain in urocanase › Urocanase_C | 0.54 | 46.0 | 3.54e-01 | 98.9% | 74.9% |
| 3703843 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 46.0 | 4.73e-01 | 95.5% | 96.5% |
| 4566363 | 304.120.1.18 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › Inhibitor_I9 | 0.54 | 40.0 | 4.25e-01 | 94.4% | 96.0% |
| 4081443 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.53 | 42.0 | 3.70e-01 | 88.8% | 92.4% |
| 4951347 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 45.0 | 3.89e-01 | 100.0% | 85.2% |
| 3885425 | 304.9.1.10 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Calcipressin | 0.53 | 43.0 | 4.03e-01 | 94.4% | 70.4% |
| 4222754 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.53 | 44.0 | 3.83e-01 | 96.6% | 59.3% |
| 5013250 | 304.33.1.1 ↗ | a+b two layers › Alpha-beta plaits › CheY-binding domain of CheA › CheY-binding domain of CheA › P2 | 0.53 | 43.0 | 4.43e-01 | 94.4% | 96.5% |
| 3622300 | 304.9.1.16 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_3 | 0.53 | 44.0 | 4.14e-01 | 95.5% | 73.9% |
| 4487660 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.52 | 43.0 | 3.42e-01 | 91.0% | 91.1% |
| 3037399 | 304.51.1.5 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 | 0.52 | 43.0 | 4.37e-01 | 92.1% | 94.3% |
| 4948505 | 865.1.1.1 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 | 0.51 | 39.0 | 3.07e-01 | 86.5% | 92.7% |
| 2832640 | 308.2.1.1 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain › PBP_dimer | 0.51 | 38.0 | 4.06e-01 | 88.8% | 100.0% |
| 3513026 | 304.9.1.18 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Tap-RNA_bind | 0.50 | 41.0 | 4.18e-01 | 92.1% | 95.3% |