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NC_031906.1__YP_009321440.1__BOW87_gp081__00177

Bact-Vir

NC_031906.1__YP_009321440.1__BOW87_gp081__00177

Identity

Accession:
NC_031906 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Charybdisvirus› Synechococcus_phage_S-CAM3

TaxID: 1883366

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-101
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 45.0 5.80e-01 77.0% 98.3%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 34.0 4.23e-01 76.0% 84.7%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 3.61e-01 100.0% 46.4%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 38.0 4.40e-01 93.0% 91.4%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.47e-01 98.0% 91.8%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 38.0 4.31e-01 85.0% 88.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3869065 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 52.0 5.21e-01 76.0% 67.0%
4335022 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 51.0 5.30e-01 76.0% 70.5%
3572436 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 51.0 4.96e-01 76.0% 60.9%
4091791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.71e-01 85.0% 92.0%
3204891 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.69e-01 73.0% 97.3%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.69 44.0 4.89e-01 95.0% 81.2%
3757490 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.66 50.0 5.17e-01 100.0% 86.3%
3934278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.47e-01 100.0% 64.3%
3842361 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.65 53.0 5.42e-01 100.0% 91.6%
4547406 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.65 37.0 4.09e-01 83.0% 70.0%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 36.0 4.05e-01 84.0% 73.3%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 46.0 4.63e-01 99.0% 76.0%
4339993 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.62 36.0 3.81e-01 84.0% 63.3%
3645842 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.61 38.0 4.23e-01 78.0% 78.8%
1557343 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.60 38.0 4.40e-01 93.0% 91.4%
4243492 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.59 33.0 4.06e-01 86.0% 91.7%
3587082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 32.0 4.15e-01 87.0% 98.1%
3839839 4.1.1.84 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_7 0.57 41.0 4.27e-01 75.0% 84.4%
3793700 219.1.1.110 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.56 50.0 4.25e-01 100.0% 60.6%
3574352 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.56 49.0 4.80e-01 100.0% 88.2%
4045576 4.1.1.161 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4178 0.56 35.0 4.11e-01 99.0% 96.9%
4984069 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 46.0 4.17e-01 100.0% 65.7%
5025236 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 48.0 4.44e-01 100.0% 75.2%
4944596 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.55 42.0 3.95e-01 100.0% 65.6%
4950268 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.54 32.0 3.89e-01 100.0% 96.7%
1140900 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.53 30.0 3.59e-01 87.0% 89.8%
3544563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 36.0 3.61e-01 70.0% 87.6%
3258825 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.52 37.0 2.53e-01 75.0% 68.6%
3578637 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 45.0 3.31e-01 100.0% 64.8%
2036627 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.51 31.0 3.52e-01 99.0% 83.1%
3540354 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 33.0 3.89e-01 86.0% 98.5%
5039819 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.51 44.0 4.11e-01 100.0% 84.6%
5012425 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.51 46.0 4.14e-01 100.0% 80.0%
3582440 4.1.1.107 ↗ beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.51 45.0 3.71e-01 100.0% 85.9%
D2 high residues 109-194_248-316
PDB
Domain cluster: rep: NC_041929.1__YP_009601486.1__FDH46_gp117__00361__D65-138_192-233
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4okcA01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.55 25.0 3.47e-01 92.3% 89.9%
4k2xA03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.54 26.0 3.01e-01 86.5% 59.8%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.53 41.0 4.05e-01 99.4% 75.1%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 31.0 3.32e-01 88.4% 66.2%
4xqkA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 36.0 3.76e-01 98.1% 77.1%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 21.0 3.11e-01 86.5% 95.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4271425 2008.1.1.81 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2726 0.57 39.0 3.93e-01 89.0% 67.5%
5016968 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 39.0 4.13e-01 98.1% 80.0%
3988610 2008.1.1.15 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.56 37.0 4.04e-01 96.8% 78.5%
3598248 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 40.0 4.47e-01 97.4% 94.2%
4352326 2008.1.1.81 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2726 0.56 39.0 4.35e-01 87.7% 91.7%
5004397 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 43.0 4.31e-01 98.1% 80.6%
4971490 2008.4.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like 0.53 37.0 4.23e-01 96.1% 98.2%
5037144 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 36.0 3.99e-01 94.8% 89.5%
3955210 2008.1.1.60 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat_2 0.52 39.0 3.89e-01 99.4% 75.2%
4609469 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 35.0 4.00e-01 94.8% 98.2%
4932253 2008.1.1.100 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 0.51 44.0 4.52e-01 92.9% 97.9%
5040208 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 36.0 3.79e-01 94.2% 83.7%
D3 medium residues 195-247_318-360
PDB
Domain cluster: rep: NC_041929.1__YP_009601486.1__FDH46_gp117__00361__D139-191_234-274
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nyrA03 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 46.0 3.22e-01 84.4% 68.0%
3a2eA00 3.30.430.20 Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif 0.55 44.0 4.26e-01 86.5% 93.5%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 45.0 4.03e-01 89.6% 76.9%
6ll8A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.51 36.0 3.42e-01 76.0% 66.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080022 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.59 49.0 4.27e-01 90.6% 71.0%
4949740 223.1.1.76 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_7 0.58 48.0 4.63e-01 90.6% 92.7%
3441744 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.57 46.0 4.52e-01 88.5% 100.0%
4592207 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 47.0 4.13e-01 90.6% 73.8%
4943853 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 49.0 4.27e-01 95.8% 68.3%
4583308 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 46.0 3.88e-01 91.7% 64.1%
3412032 223.1.1.71 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 0.54 47.0 3.47e-01 99.0% 67.0%
3241603 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.54 46.0 3.89e-01 95.8% 64.2%
4379531 223.1.1.41 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.54 44.0 3.55e-01 90.6% 58.5%
4353676 223.1.1.41 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.54 44.0 3.97e-01 90.6% 84.4%
3561689 223.1.1.71 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 0.54 43.0 3.25e-01 89.6% 34.4%
3937193 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.53 45.0 3.72e-01 93.8% 60.6%
3372482 2004.1.1.88 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW 0.53 38.0 2.97e-01 77.1% 39.5%
4633556 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.52 39.0 2.55e-01 83.3% 68.5%
3958221 304.55.1.0 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains 0.52 42.0 3.68e-01 91.7% 78.1%
None — 0.51 42.0 3.59e-01 91.7% 79.4%
5051418 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 39.0 3.55e-01 84.4% 67.4%
3484133 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 41.0 3.83e-01 91.7% 82.4%
3989572 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.50 41.0 3.63e-01 91.7% 69.1%
1687158 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.50 37.0 3.13e-01 79.2% 55.0%