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NC_031918.1__YP_009322218.1__BOX16_gp21__00021

Bact-Vir

NC_031918.1__YP_009322218.1__BOX16_gp21__00021

Identity

Accession:
NC_031918 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saltrevirus› Salmonella_phage_64795_sal3

TaxID: 1813769

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-160
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 59.9 1.90e-16 51.1% 97.8%
D2 high residues 174-236
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.79 61.0 6.33e-01 81.0% 94.8%
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.78 59.0 5.99e-01 81.0% 87.3%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.70 53.0 4.18e-01 81.0% 64.6%
6g85A01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 44.0 3.43e-01 93.7% 71.0%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 42.0 2.82e-01 98.4% 65.4%
2kgsA01 3.40.1520.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › 0.50 36.0 3.07e-01 77.8% 98.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3333577 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.84 65.0 5.54e-01 81.0% 64.2%
3827127 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.84 64.0 5.50e-01 81.0% 56.8%
3468885 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.83 63.0 5.81e-01 81.0% 68.8%
3671921 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.82 62.0 6.63e-01 79.4% 94.5%
3661849 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.80 62.0 6.23e-01 81.0% 84.1%
3831192 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.80 62.0 5.51e-01 81.0% 64.7%
3382011 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.80 62.0 5.64e-01 81.0% 76.2%
3380188 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.80 62.0 6.57e-01 81.0% 98.2%
3370971 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.80 61.0 5.37e-01 81.0% 68.9%
3429505 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.80 61.0 5.00e-01 81.0% 70.0%
3327654 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.80 61.0 5.74e-01 81.0% 76.0%
3508121 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.60 46.0 3.58e-01 84.1% 37.1%
3185896 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.56 40.0 2.69e-01 77.8% 46.6%
3231491 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.55 38.0 3.43e-01 74.6% 77.9%
3610294 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.55 39.0 3.48e-01 74.6% 76.7%
4039359 310.1.1.2 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.51 39.0 3.27e-01 85.7% 78.3%
3215611 109.1.1.23 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Tom37 0.51 35.0 3.26e-01 73.0% 92.9%
3231391 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 42.0 2.96e-01 100.0% 56.7%