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NC_031924.1__YP_009322749.1__BOW75_gp36__00036

Bact-Vir

NC_031924.1__YP_009322749.1__BOW75_gp36__00036

Identity

Accession:
NC_031924 ↗
Kingdom:
phage

Quality

69.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shuimuvirus› Salmonella_phage_IME207

TaxID: 1873985

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-35
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mwrA03 3.30.1390.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Penicillin-binding protein 2a; domain 3 0.72 56.0 4.67e-01 97.1% 100.0%
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.67 53.0 3.57e-01 100.0% 94.9%
3fmgA02 2.60.120.800 Mainly Beta › Sandwich › Jelly Rolls › Rotavirus outer-layer protein VP7, domain 2 0.65 52.0 4.02e-01 100.0% 51.7%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 51.0 3.42e-01 100.0% 22.1%
2cfmA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.64 54.0 3.46e-01 100.0% 80.6%
1pzxA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.62 47.0 4.77e-01 100.0% 94.3%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.61 44.0 4.02e-01 100.0% 60.7%
3uifA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 44.0 3.46e-01 100.0% 86.3%
1epfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 3.57e-01 100.0% 51.0%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.46e-01 100.0% 43.1%
3uzeC00 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 3.54e-01 100.0% 45.7%
1fvqA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 3.94e-01 100.0% 90.3%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.41e-01 100.0% 53.1%
4lesA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 2.99e-01 100.0% 43.0%
1vs0A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.55 42.0 3.10e-01 91.2% 95.5%
2wyhA07 2.60.40.2220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.40e-01 100.0% 40.3%
1odhA02 3.30.70.3530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GCM motif 0.55 36.0 3.49e-01 91.2% 78.0%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.55 42.0 3.07e-01 100.0% 44.5%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 2.31e-01 85.3% 19.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964967 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.78 61.0 4.13e-01 100.0% 22.9%
3781851 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.75 57.0 3.50e-01 100.0% 13.1%
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.73 56.0 4.94e-01 100.0% 65.0%
3932124 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.72 55.0 3.41e-01 100.0% 14.0%
4990952 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.67 53.0 5.31e-01 97.1% 100.0%
4033712 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 56.0 4.26e-01 100.0% 69.4%
3843155 886.1.1.0 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain 0.66 53.0 3.50e-01 100.0% 45.1%
4509186 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.65 54.0 3.48e-01 100.0% 27.6%
3303628 822.1.1.3 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 0.64 48.0 4.53e-01 100.0% 74.0%
4024679 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.62 47.0 4.20e-01 100.0% 63.3%
3844936 101.1.1.273 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26094 0.58 43.0 3.46e-01 82.4% 70.7%
None — 0.56 48.0 2.99e-01 100.0% 36.1%
4971063 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 47.0 3.38e-01 100.0% 46.7%
3748070 220.1.1.130 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_21 0.56 40.0 2.93e-01 82.4% 25.8%
5025086 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.56 42.0 3.87e-01 100.0% 94.5%
3318800 221.1.1.22 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ufm1 0.51 42.0 3.58e-01 100.0% 56.7%
4564280 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 38.0 2.44e-01 88.2% 37.1%
4150743 205.1.1.42 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_6, Fer4_7 0.50 38.0 3.02e-01 100.0% 86.3%
5062701 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.50 37.0 2.95e-01 100.0% 90.5%