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NC_031927.1__YP_009323008.1__BOW86_gp075__00075

Bact-Vir

NC_031927.1__YP_009323008.1__BOW86_gp075__00075

Identity

Accession:
NC_031927 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-57
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.82 65.0 6.47e-01 100.0% 84.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.79 64.0 6.41e-01 100.0% 88.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.79 64.0 5.34e-01 100.0% 51.8%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 63.0 6.03e-01 100.0% 86.0%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.70 62.0 4.93e-01 100.0% 62.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 62.0 5.68e-01 100.0% 82.5%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.67 58.0 3.82e-01 100.0% 28.2%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.40e-01 100.0% 81.4%
1ko2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.66 50.0 3.25e-01 83.7% 25.7%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.65 51.0 4.87e-01 91.8% 75.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.04e-01 100.0% 78.8%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.64 49.0 3.15e-01 85.7% 46.7%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 47.0 3.55e-01 79.6% 65.8%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 46.0 3.71e-01 77.6% 82.3%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.63 47.0 3.45e-01 81.6% 42.2%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 52.0 3.81e-01 93.9% 92.6%
1vwxB03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.63 47.0 3.58e-01 83.7% 100.0%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.62 46.0 3.27e-01 81.6% 73.8%
4ljzC06 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 49.0 4.38e-01 91.8% 90.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 3.95e-01 95.9% 100.0%
4cvuA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 3.50e-01 83.7% 93.1%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 46.0 3.51e-01 87.8% 82.9%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 40.0 4.36e-01 71.4% 94.6%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.60 46.0 3.48e-01 93.9% 87.7%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.60 47.0 4.20e-01 87.8% 88.9%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 43.0 3.36e-01 87.8% 35.8%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 46.0 3.08e-01 89.8% 43.5%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 3.95e-01 95.9% 75.0%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 46.0 3.01e-01 93.9% 33.5%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 45.0 3.30e-01 91.8% 67.9%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.58 43.0 4.38e-01 83.7% 100.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.51e-01 100.0% 89.7%
3iwgA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 43.0 3.23e-01 85.7% 47.8%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 45.0 2.94e-01 91.8% 28.1%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.57 47.0 3.29e-01 100.0% 29.3%
2e8yA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 40.0 3.39e-01 81.6% 41.1%
1gmeA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.06e-01 83.7% 86.0%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 45.0 3.69e-01 100.0% 50.0%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.56 42.0 3.74e-01 83.7% 67.1%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 45.0 3.42e-01 95.9% 50.8%
1xeuA02 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 3.57e-01 83.7% 75.9%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.55 35.0 3.76e-01 71.4% 79.5%
2covG00 2.60.40.2450 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain 0.55 45.0 3.89e-01 100.0% 92.0%
3zqsA02 3.10.110.20 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like 0.55 41.0 3.38e-01 83.7% 42.9%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.55 45.0 3.25e-01 98.0% 69.9%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 37.0 2.63e-01 81.6% 20.9%
3fmcA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 45.0 4.03e-01 95.9% 85.1%
2qj8A00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 46.0 2.87e-01 100.0% 51.3%
4zglD00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.55 44.0 3.53e-01 87.8% 89.2%
3qx3B03 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 38.0 3.25e-01 83.7% 70.0%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.01e-01 95.9% 30.4%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.51 41.0 2.78e-01 95.9% 25.8%
3ibjA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 43.0 3.01e-01 100.0% 55.1%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 38.0 2.91e-01 89.8% 44.1%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.42e-01 98.0% 94.3%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952887 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.91 75.0 7.18e-01 100.0% 78.2%
3603357 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 71.0 6.89e-01 100.0% 81.8%
4972872 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.85 69.0 7.15e-01 100.0% 95.6%
4981036 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.81 65.0 6.69e-01 100.0% 95.6%
3473464 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.76 67.0 4.61e-01 100.0% 32.3%
4929053 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.76 59.0 5.25e-01 85.7% 74.3%
5005032 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 64.0 5.72e-01 100.0% 67.1%
4281699 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 65.0 5.71e-01 100.0% 78.7%
5055961 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.74 66.0 5.56e-01 100.0% 66.3%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.51e-01 100.0% 81.3%
3964889 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 64.0 5.58e-01 100.0% 70.7%
5029643 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 64.0 5.44e-01 100.0% 66.3%
2831853 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.72 64.0 4.42e-01 100.0% 38.4%
4976896 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 64.0 5.12e-01 100.0% 55.8%
3608487 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 57.0 4.53e-01 89.8% 88.6%
4165306 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.72 58.0 4.57e-01 91.8% 52.4%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.20e-01 100.0% 71.8%
959119 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.72 63.0 6.14e-01 100.0% 90.7%
3578918 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.71 52.0 3.77e-01 79.6% 28.1%
3599172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.77e-01 100.0% 80.0%
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 60.0 5.17e-01 100.0% 77.5%
3789647 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 62.0 4.33e-01 100.0% 39.4%
4340758 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.41e-01 100.0% 85.7%
3189199 109.1.1.35 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › PF25907 0.70 59.0 3.77e-01 100.0% 20.4%
4078120 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.70 62.0 6.02e-01 100.0% 92.7%
4484974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.09e-01 100.0% 71.8%
3928711 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.06e-01 100.0% 57.6%
3174293 101.1.2.284 alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.70 62.0 4.13e-01 100.0% 33.2%
4632710 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.38e-01 87.8% 88.9%
4220126 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 58.0 4.96e-01 100.0% 67.1%
3888254 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.44e-01 91.8% 95.6%
4481633 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.67 53.0 4.07e-01 91.8% 44.0%
3605378 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.67 56.0 4.29e-01 91.8% 92.7%
3749631 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.67 52.0 4.12e-01 91.8% 41.0%
3177048 719.2.1.0 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.67 50.0 4.11e-01 83.7% 85.3%
3288884 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.15e-01 87.8% 46.7%
4398865 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 55.0 4.58e-01 100.0% 84.2%
3785687 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.65 53.0 4.24e-01 100.0% 65.2%
3483223 109.21.1.3 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.65 48.0 2.78e-01 81.6% 21.5%
3574380 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.64 48.0 3.22e-01 91.8% 20.1%
5074217 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.64 47.0 3.24e-01 81.6% 21.2%
3601211 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.64 46.0 3.02e-01 81.6% 62.0%
3244230 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.63 48.0 3.48e-01 85.7% 88.7%
3481960 220.1.1.28 beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.63 54.0 4.04e-01 100.0% 64.6%
3900117 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 49.0 3.62e-01 87.8% 75.0%
5007378 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.63 49.0 4.81e-01 87.8% 78.2%
1229008 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.63 49.0 4.12e-01 85.7% 73.8%
5018514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 3.91e-01 100.0% 70.4%
3180828 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 47.0 3.30e-01 93.9% 64.7%
4946794 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.59 44.0 2.88e-01 83.7% 97.6%
3934655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.19e-01 100.0% 98.8%
3519618 109.21.1.4 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16 0.58 41.0 2.40e-01 75.5% 8.0%
3920534 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.58 39.0 2.96e-01 73.5% 28.0%
4242808 101.1.8.6 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › ResT-TelK_cat 0.57 45.0 3.53e-01 93.9% 47.5%
3488611 383.1.2.0 few secondary structure elements › Defensin-like › Defensin-related › Laterosporulin 0.56 40.0 4.29e-01 83.7% 95.0%
4141218 4099.1.1.6 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Ctf19_RWD2 0.56 37.0 3.20e-01 81.6% 41.2%
4040973 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.56 46.0 4.22e-01 100.0% 84.3%
3534702 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.55 40.0 3.32e-01 87.8% 95.5%
3243400 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 2.99e-01 100.0% 50.2%
4120506 243.11.1.4 a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.54 43.0 3.89e-01 100.0% 61.3%
3857251 1134.1.2.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain 0.54 39.0 3.27e-01 87.8% 95.5%
3693476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 44.0 3.61e-01 98.0% 84.8%
3846231 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 44.0 2.62e-01 100.0% 88.8%
4257535 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.53 39.0 3.16e-01 89.8% 71.3%
3735669 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 41.0 3.47e-01 93.9% 71.1%
4039533 3321.1.1.1 a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander 0.51 39.0 2.84e-01 89.8% 55.6%
223793 101.1.8.6 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › ResT-TelK_cat 0.51 41.0 3.08e-01 95.9% 39.7%