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NC_031927.1__YP_009323025.1__BOW86_gp092__00092

Bact-Vir

NC_031927.1__YP_009323025.1__BOW86_gp092__00092

Identity

Accession:
NC_031927 ↗
Kingdom:
phage

Quality

70.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Mazuvirus› Synechococcus_phage_S-CAM7

TaxID: 1883368

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-81
PDB
Domain cluster: rep: NC_047714.1__YP_009778763.1__HOQ63_gp036__00036__D9-85
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 49.0 4.44e-01 72.2% 92.5%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 47.0 3.53e-01 72.2% 97.3%
3w3aG00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 45.0 3.34e-01 73.4% 60.0%
3pf7B00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.65 47.0 2.86e-01 100.0% 12.8%
4c89C00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 44.0 2.86e-01 78.5% 81.7%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 3.18e-01 97.5% 37.6%
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.40e-01 73.4% 97.3%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 45.0 3.81e-01 92.4% 82.2%
6tmfI00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.52 36.0 2.66e-01 98.7% 26.6%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 40.0 2.74e-01 86.1% 57.7%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.87e-01 87.3% 74.7%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.51 38.0 4.00e-01 81.0% 87.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037750 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.72 50.0 3.66e-01 72.2% 55.9%
5050213 192.2.1.87 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D 0.71 49.0 3.67e-01 72.2% 81.6%
5000798 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.70 49.0 3.66e-01 72.2% 93.5%
5041611 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.70 49.0 3.59e-01 72.2% 62.6%
4090678 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.70 48.0 3.48e-01 72.2% 83.7%
3989573 601.14.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.62 51.0 3.74e-01 89.9% 40.5%
3220364 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.62 44.0 3.25e-01 74.7% 34.0%
4960230 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.61 42.0 3.12e-01 72.2% 53.8%
4989946 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 37.0 3.36e-01 73.4% 84.5%
4030646 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.52 38.0 3.35e-01 97.5% 54.5%
5047552 2008.1.1.201 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_CfrBI 0.50 45.0 3.02e-01 100.0% 45.3%