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NC_031927.1__YP_009323114.1__BOW86_gp181__00181

Bact-Vir

NC_031927.1__YP_009323114.1__BOW86_gp181__00181

Identity

Accession:
NC_031927 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Mazuvirus› Synechococcus_phage_S-CAM7

TaxID: 1883368

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-103
PDB
Domain cluster: rep: OL473597.1__UNH61259.1__SSZBM1_142__00142__D5-80
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.89 55.0 6.91e-01 85.6% 100.0%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 50.0 5.85e-01 86.7% 84.6%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 48.0 6.10e-01 84.4% 96.4%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 52.0 6.29e-01 82.2% 96.7%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 48.0 5.92e-01 85.6% 93.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 55.0 6.17e-01 86.7% 88.6%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 51.0 6.13e-01 88.9% 96.6%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 54.0 6.18e-01 93.3% 92.4%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 47.0 5.81e-01 84.4% 93.0%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 51.0 6.04e-01 97.8% 93.7%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 49.0 4.74e-01 87.8% 57.1%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 49.0 5.94e-01 95.6% 95.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 42.0 5.52e-01 84.4% 100.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 47.0 5.39e-01 87.8% 80.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 47.0 5.69e-01 85.6% 93.2%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 52.0 6.08e-01 95.6% 96.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 50.0 5.69e-01 88.9% 88.1%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 54.0 5.61e-01 98.9% 78.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 42.0 4.87e-01 94.4% 75.4%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 48.0 5.69e-01 88.9% 92.1%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 52.0 5.65e-01 90.0% 86.7%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.78e-01 93.3% 94.4%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 42.0 5.12e-01 95.6% 94.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 42.0 4.85e-01 100.0% 88.3%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 42.0 4.79e-01 86.7% 95.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.87e-01 100.0% 88.9%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 40.0 3.93e-01 100.0% 59.4%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.58e-01 94.4% 83.3%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.77e-01 100.0% 90.4%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 54.0 5.24e-01 98.9% 98.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.58 37.0 3.69e-01 100.0% 59.2%
1h2eA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.53 36.0 2.81e-01 88.9% 30.0%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.52 45.0 4.05e-01 98.9% 99.2%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.61e-01 100.0% 81.4%
6p3qA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 46.0 3.84e-01 100.0% 77.8%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.50 29.0 3.59e-01 100.0% 94.5%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2410170 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.89 58.0 6.92e-01 86.7% 95.2%
1320680 4.1.1.115 ↗ beta barrels › SH3 › SH3 › SH3 › LytB_SH3 0.84 55.0 6.41e-01 94.4% 91.0%
4127826 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.84 58.0 6.78e-01 88.9% 98.5%
4650162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 57.0 6.64e-01 93.3% 96.9%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.82 59.0 6.67e-01 85.6% 95.7%
1263586 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 55.0 6.11e-01 86.7% 86.1%
3748846 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 51.0 5.91e-01 90.0% 87.7%
3869065 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.81 58.0 5.63e-01 87.8% 67.0%
4091791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 6.65e-01 95.6% 93.3%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.80 49.0 5.39e-01 91.1% 74.7%
3522910 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.80 51.0 5.54e-01 90.0% 77.3%
3572436 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 57.0 5.25e-01 88.9% 60.0%
3217112 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 49.0 5.48e-01 88.9% 80.0%
137947 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.79 52.0 6.00e-01 86.7% 91.0%
3931418 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 48.0 5.74e-01 88.9% 91.7%
3933965 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 48.0 5.91e-01 88.9% 96.6%
5058103 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 47.0 5.39e-01 100.0% 80.9%
4644007 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.78 44.0 5.37e-01 94.4% 86.4%
4335022 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 56.0 5.52e-01 87.8% 70.5%
1673571 4.1.1.120 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_16 0.78 54.0 5.90e-01 94.4% 85.5%
3904253 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 49.0 5.69e-01 87.8% 89.2%
3561462 148.1.3.384 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.77 48.0 3.85e-01 93.3% 33.5%
4941620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 44.0 5.23e-01 94.4% 85.0%
3482677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 50.0 5.59e-01 88.9% 85.7%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.76 48.0 4.80e-01 100.0% 63.3%
4138563 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 43.0 4.97e-01 94.4% 78.5%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 50.0 5.37e-01 100.0% 81.3%
5029655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 44.0 5.27e-01 96.7% 88.3%
4033059 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.82e-01 93.3% 87.5%
4009391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 52.0 5.46e-01 87.8% 82.5%
3925408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 39.0 5.11e-01 93.3% 96.0%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 42.0 4.67e-01 100.0% 74.3%
4484893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 42.0 4.79e-01 95.6% 80.0%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.72 47.0 4.63e-01 100.0% 63.2%
4386715 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 58.0 6.02e-01 90.0% 91.8%
3204891 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.71e-01 84.4% 94.7%
3789696 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 44.0 4.41e-01 100.0% 63.3%
1826883 4.1.1.83 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_6 0.69 58.0 6.04e-01 94.4% 96.3%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.69 48.0 5.08e-01 100.0% 81.2%
3501560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.06e-01 100.0% 76.7%
4802780 4.1.1.83 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_6 0.68 60.0 4.61e-01 94.4% 45.4%
4041535 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.66 54.0 5.47e-01 94.4% 89.8%
3517456 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.64 48.0 5.26e-01 84.4% 93.3%
1175057 4.1.1.145 ↗ beta barrels › SH3 › SH3 › SH3 › Crb2_Tudor 0.63 41.0 4.22e-01 94.4% 68.2%
3991065 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.63 48.0 5.11e-01 87.8% 90.0%
3396740 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 5.23e-01 100.0% 90.5%
5005903 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.57 37.0 3.60e-01 100.0% 58.0%
3427044 4.1.1.36 ↗ beta barrels › SH3 › SH3 › SH3 › FeThRed_A 0.57 49.0 4.95e-01 100.0% 93.3%
3269253 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 41.0 3.86e-01 81.1% 78.3%
3481270 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.53 41.0 3.12e-01 83.3% 75.0%
4497776 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.52 31.0 3.31e-01 75.6% 66.3%
3224815 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 39.0 3.68e-01 82.2% 87.0%
D2 high residues 109-194_288-319
PDB
Domain cluster: rep: MT135025.1__QIW90411.1__GCAPEGMB_00064__00064__D70-136_204-230
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2py5A05 4.10.80.20 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5 0.66 18.0 3.48e-01 94.9% 83.3%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 33.0 4.12e-01 98.3% 84.1%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.61 18.0 3.10e-01 93.2% 80.0%
1v8qA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 29.0 3.68e-01 92.4% 83.3%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 43.0 4.48e-01 96.6% 93.4%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.50 29.0 2.58e-01 87.3% 36.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3471987 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.60 29.0 4.01e-01 93.2% 98.2%
4028092 325.1.8.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N 0.60 28.0 3.80e-01 90.7% 90.9%
5030835 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.57 24.0 2.83e-01 87.3% 51.8%
4932253 2008.1.1.100 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 0.57 49.0 4.57e-01 92.4% 93.1%
3416144 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.53 36.0 3.02e-01 70.3% 93.8%
3279082 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.53 32.0 3.78e-01 97.5% 93.3%
4352326 2008.1.1.81 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2726 0.52 46.0 4.58e-01 94.1% 96.7%
3955873 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.52 32.0 3.81e-01 97.5% 100.0%
3665695 2498.1.1.6 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.51 42.0 2.84e-01 89.0% 65.2%
4271425 2008.1.1.81 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2726 0.51 44.0 4.01e-01 94.1% 71.2%
5004397 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 46.0 4.13e-01 98.3% 100.0%
3598248 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 45.0 4.49e-01 98.3% 98.3%
D3 high residues 199-281_321-375
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xaeB00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.53 42.0 3.32e-01 88.4% 83.3%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 30.0 2.90e-01 86.2% 46.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3580019 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 27.0 3.58e-01 88.4% 100.0%