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NC_031938.1__YP_009324532.1__BOW78_gp09__00009

Bact-Vir

NC_031938.1__YP_009324532.1__BOW78_gp09__00009

Identity

Accession:
NC_031938 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-122
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.65 45.0 4.50e-01 89.1% 68.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 35.0 4.18e-01 89.1% 79.7%
3h7tA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 41.0 4.28e-01 90.8% 72.1%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.61 38.0 4.05e-01 88.2% 71.2%
2gmqA00 2.40.450.10 Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain 0.60 41.0 4.45e-01 86.6% 84.8%
1vf7F01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.59 42.0 4.47e-01 87.4% 85.3%
5zm4B00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.58 44.0 3.42e-01 82.4% 79.9%
2gujA01 2.30.110.40 Mainly Beta › Roll › Pnp Oxidase; Chain A › Phage tail tube protein 0.57 49.0 4.76e-01 92.4% 89.4%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 47.0 4.55e-01 93.3% 90.5%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 4.81e-01 92.4% 95.7%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 40.0 4.20e-01 100.0% 87.5%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.53 46.0 4.24e-01 96.6% 86.5%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 31.0 3.61e-01 85.7% 85.4%
1mppA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 44.0 3.97e-01 100.0% 84.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3166182 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.67 40.0 4.50e-01 89.1% 77.8%
4393593 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.65 49.0 5.32e-01 95.0% 97.9%
1560729 1.1.5.35 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.65 49.0 4.65e-01 92.4% 66.0%
3966429 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.65 47.0 5.19e-01 89.1% 98.9%
3972305 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 47.0 5.20e-01 89.1% 98.9%
4608778 1.1.7.107 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.64 41.0 4.13e-01 88.2% 64.2%
3968097 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 43.0 4.45e-01 92.4% 74.5%
4344991 1.1.5.35 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.63 49.0 4.77e-01 92.4% 76.2%
3957192 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.62 47.0 4.66e-01 92.4% 76.0%
4247994 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.61 48.0 5.13e-01 91.6% 100.0%
4960006 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 46.0 4.82e-01 92.4% 88.1%
4809346 1.1.13.57 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.60 42.0 4.76e-01 84.9% 100.0%
2468519 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 46.0 4.94e-01 89.9% 98.0%
3240679 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 40.0 3.62e-01 87.4% 51.2%
4016863 1.1.9.27 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF7029 0.58 44.0 4.22e-01 91.6% 69.6%
3187444 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.56 42.0 4.33e-01 89.9% 80.9%
136189 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 48.0 4.46e-01 92.4% 76.9%
3382791 60.1.2.2 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.55 47.0 3.56e-01 95.8% 61.3%
3663962 60.1.2.1 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.54 47.0 3.58e-01 95.8% 56.9%
4100169 223.1.1.155 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY, PAS, GAF, PAS_2 0.52 37.0 2.31e-01 73.9% 54.0%
2491347 3856.1.2.1 beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.51 29.0 3.34e-01 88.2% 76.1%
5053791 1.1.7.14 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.50 41.0 3.90e-01 88.2% 84.3%
D2 high residues 152-184_212-246_433-471
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 64.0 6.57e-01 79.4% 91.3%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 59.0 6.01e-01 74.8% 100.0%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 64.0 5.13e-01 82.2% 52.6%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 51.0 5.93e-01 75.7% 93.6%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 51.0 6.12e-01 86.9% 100.0%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 56.0 5.79e-01 77.6% 100.0%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.75 55.0 5.68e-01 77.6% 80.4%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.74 51.0 5.88e-01 100.0% 93.8%
2m6bA00 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.74 54.0 4.79e-01 83.2% 54.0%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 56.0 5.81e-01 83.2% 87.6%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.73 56.0 5.30e-01 83.2% 68.0%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.73 55.0 5.78e-01 79.4% 87.8%
4flbA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.71 51.0 4.80e-01 92.5% 61.8%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 59.0 4.89e-01 89.7% 53.8%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.70 50.0 4.92e-01 84.1% 69.3%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.70 59.0 5.26e-01 92.5% 87.1%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 55.0 5.29e-01 84.1% 95.1%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.69 55.0 4.51e-01 84.1% 50.3%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.68 41.0 3.82e-01 87.9% 48.1%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.67 54.0 5.32e-01 86.0% 89.5%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.65 46.0 5.11e-01 100.0% 90.8%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 51.0 4.42e-01 85.0% 56.1%
2i9cA01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.64 46.0 4.57e-01 90.7% 71.2%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.64 53.0 5.00e-01 88.8% 84.4%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.64 42.0 4.52e-01 76.6% 80.9%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.63 47.0 3.91e-01 79.4% 60.9%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 51.0 5.08e-01 86.0% 86.4%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 50.0 4.23e-01 86.9% 72.6%
7sgrA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.62 55.0 3.96e-01 98.1% 98.4%
4q4hA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.62 56.0 3.96e-01 99.1% 94.3%
1q16C01 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.61 49.0 3.93e-01 86.0% 66.8%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.61 48.0 4.82e-01 88.8% 83.5%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.61 38.0 4.31e-01 77.6% 81.9%
2d2sA02 1.20.58.1220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain 0.60 51.0 5.21e-01 100.0% 100.0%
8sbeA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.59 44.0 3.64e-01 83.2% 44.4%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.58 53.0 4.34e-01 100.0% 56.8%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.58 48.0 5.09e-01 100.0% 100.0%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.58 55.0 3.82e-01 100.0% 74.1%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 54.0 4.20e-01 100.0% 65.6%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 53.0 4.21e-01 100.0% 67.5%
1wvtA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.57 46.0 4.18e-01 89.7% 83.8%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.55 45.0 3.94e-01 100.0% 58.4%
4p9fA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.53 42.0 3.76e-01 82.2% 78.5%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3693258 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.86 65.0 6.48e-01 78.5% 98.2%
4941262 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.83 60.0 6.14e-01 82.2% 77.7%
3307044 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.82 63.0 6.38e-01 82.2% 81.0%
2818706 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.78 71.0 5.42e-01 97.2% 50.4%
3701245 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.78 60.0 5.95e-01 80.4% 98.2%
4026054 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.76 60.0 5.21e-01 83.2% 82.9%
3832135 604.6.1.2 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › ANTH 0.75 66.0 6.08e-01 94.4% 92.6%
3495507 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 53.0 4.53e-01 100.0% 47.3%
3328660 604.6.1.2 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › ANTH 0.75 67.0 6.06e-01 97.2% 86.2%
3236134 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.74 55.0 4.54e-01 100.0% 46.9%
4958131 109.10.1.0 alpha superhelices › Repetitive alpha hairpins › Translin › Translin 0.73 61.0 4.85e-01 88.8% 49.8%
4038138 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.73 52.0 4.84e-01 99.1% 60.8%
3729395 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.71 55.0 5.20e-01 83.2% 68.5%
4947713 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.71 46.0 4.58e-01 75.7% 63.6%
3533309 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.71 56.0 5.65e-01 83.2% 88.6%
3496957 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.70 49.0 3.03e-01 100.0% 13.5%
4057957 603.5.1.1 alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN 0.69 54.0 4.88e-01 80.4% 75.7%
5028679 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.69 45.0 4.66e-01 100.0% 68.9%
4959944 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 49.0 3.79e-01 79.4% 36.4%
5036323 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.67 44.0 4.46e-01 70.1% 66.7%
4023478 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.67 51.0 4.22e-01 80.4% 46.3%
5055564 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.67 47.0 4.54e-01 72.9% 70.8%
5023839 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.66 57.0 4.62e-01 93.5% 77.0%
3592036 3291.1.1.16 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Flagellar_rod 0.66 57.0 4.59e-01 95.3% 91.0%
3753824 5059.1.1.8 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA 0.66 59.0 4.14e-01 95.3% 90.5%
4937604 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 54.0 5.26e-01 93.5% 80.0%
3908483 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.64 50.0 4.58e-01 84.1% 67.6%
3513743 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.64 58.0 5.10e-01 95.3% 87.3%
4019714 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.63 47.0 4.57e-01 83.2% 70.0%
3185412 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 48.0 4.93e-01 95.3% 83.8%
3391109 3684.1.1.21 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › TMEM138 0.63 51.0 4.67e-01 86.9% 99.3%
4260209 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.63 58.0 3.61e-01 99.1% 65.0%
3242106 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.59 52.0 4.93e-01 97.2% 81.6%
4206235 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.58 55.0 4.01e-01 99.1% 99.2%
3766182 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 55.0 4.86e-01 100.0% 94.5%
4944331 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.57 49.0 4.13e-01 93.5% 85.0%
3633938 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.57 53.0 4.62e-01 97.2% 100.0%
3692987 3755.3.1.481 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30554 0.55 52.0 4.19e-01 100.0% 63.7%
3287029 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.55 47.0 3.55e-01 97.2% 88.6%
4410114 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 49.0 3.66e-01 99.1% 97.6%
3894393 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.50 46.0 4.09e-01 100.0% 100.0%
D3 medium residues 127-151_282-310_473-491
PDB
Domain cluster: representative
D4 medium residues 252-281_311-346_419-432
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gr5A01 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.71 50.0 4.91e-01 73.8% 81.2%
3ov5A00 3.55.50.70 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.70 51.0 5.07e-01 76.2% 88.1%
4g08A01 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.70 47.0 4.99e-01 70.0% 97.1%
4m0nA02 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.68 47.0 4.85e-01 72.5% 89.6%
3gs9A02 3.55.50.40 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.66 48.0 4.60e-01 77.5% 84.8%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.52 36.0 3.37e-01 73.8% 71.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4889789 3070.1.1.16 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › PF30637 0.77 54.0 5.33e-01 73.8% 82.6%
3982238 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.74 57.0 5.47e-01 81.2% 91.1%
3974036 3070.1.1.10 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › T3S_SPI-1_N0 0.73 50.0 5.18e-01 71.2% 88.0%
3966286 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.73 51.0 5.26e-01 72.5% 88.0%
4480906 3070.1.1.10 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › T3S_SPI-1_N0 0.72 51.0 5.13e-01 73.8% 85.0%
3981376 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.71 49.0 5.05e-01 71.2% 88.0%
4048982 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.71 50.0 5.06e-01 73.8% 83.7%
3974983 3070.1.1.10 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › T3S_SPI-1_N0 0.70 48.0 4.86e-01 72.5% 87.5%
3974527 3070.1.1.4 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.69 52.0 4.96e-01 81.2% 91.6%
3972068 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.68 49.0 4.74e-01 76.2% 86.7%
185652 3070.1.1.4 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.67 50.0 4.34e-01 81.2% 62.5%
1116063 3070.1.1.4 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.67 49.0 4.70e-01 77.5% 79.6%
1108144 3070.1.1.7 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › FecR_C 0.66 46.0 4.55e-01 72.5% 82.1%
185292 3070.1.1.18 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › PF26674 0.66 47.0 4.55e-01 75.0% 85.4%
3163777 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.63 47.0 4.74e-01 80.0% 90.0%
4034461 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.63 44.0 4.14e-01 73.8% 86.0%
5035288 259.1.1.2 a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e 0.60 42.0 4.24e-01 73.8% 82.5%
3216952 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 3.60e-01 73.8% 87.1%
3678569 109.4.1.2687 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28645 0.51 39.0 2.69e-01 82.5% 90.5%
3174222 810.1.1.8 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › PF25995 0.51 34.0 2.94e-01 70.0% 74.8%
D5 medium residues 347-418_492-587
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ywxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 30.0 4.00e-01 93.5% 79.3%
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 30.0 3.92e-01 92.9% 78.5%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 29.0 3.67e-01 92.9% 68.6%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 25.0 3.30e-01 93.5% 64.6%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.61 29.0 3.78e-01 95.8% 78.9%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.60 23.0 3.04e-01 83.3% 61.5%
3girA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.59 22.0 3.16e-01 83.3% 69.2%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 27.0 3.59e-01 93.5% 79.3%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.58 23.0 3.20e-01 85.7% 71.8%
1rcqA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.57 29.0 3.08e-01 94.6% 52.7%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.55 29.0 3.52e-01 94.0% 77.1%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 25.0 3.24e-01 94.6% 75.6%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 23.0 3.06e-01 83.9% 70.1%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 24.0 3.08e-01 85.1% 72.2%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 31.0 3.63e-01 92.3% 82.9%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.52 28.0 3.31e-01 93.5% 76.1%
2iteA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 26.0 2.99e-01 94.0% 63.6%
3cgiA00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.51 24.0 2.88e-01 92.3% 63.4%
1v4pC01 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.50 28.0 3.43e-01 95.2% 84.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5064549 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.67 31.0 4.12e-01 93.5% 80.0%
5041375 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 30.0 4.06e-01 94.0% 80.0%
3210962 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 31.0 4.07e-01 95.8% 77.9%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 32.0 4.07e-01 95.2% 77.0%
3945543 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 32.0 4.33e-01 93.5% 90.6%
3237729 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 30.0 3.77e-01 95.2% 69.5%
4946793 11.1.1.1392 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Metallophos 0.64 29.0 3.42e-01 94.6% 58.3%
5040781 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.64 30.0 3.92e-01 93.5% 77.9%
3289340 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 28.0 3.94e-01 94.0% 85.0%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.61 30.0 3.88e-01 93.5% 82.6%
3299946 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.60 31.0 3.68e-01 95.2% 72.2%
3643150 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 25.0 3.44e-01 94.0% 75.3%
3700065 304.49.1.0 a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 0.58 25.0 2.99e-01 85.1% 58.2%
160389 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.57 30.0 3.51e-01 95.2% 70.7%
3968097 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.57 27.0 3.34e-01 94.6% 70.0%
4066625 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.55 28.0 3.13e-01 94.0% 60.8%
2137681 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.55 28.0 3.41e-01 95.2% 75.2%
3390626 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 21.0 3.05e-01 85.7% 78.3%
5074977 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.55 27.0 3.50e-01 93.5% 83.0%
3729936 1.1.9.27 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF7029 0.54 28.0 3.55e-01 94.0% 83.0%
3331686 304.109.1.4 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.53 25.0 3.32e-01 88.1% 81.1%
4016863 1.1.9.27 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF7029 0.53 29.0 3.26e-01 94.6% 67.4%
3374931 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 25.0 3.45e-01 98.2% 92.5%
3991321 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.52 20.0 3.17e-01 87.5% 89.2%
3464866 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.52 29.0 3.09e-01 94.6% 60.7%
4886468 12.3.1.10 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › MdoG 0.51 27.0 3.19e-01 95.8% 72.2%
3239031 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.51 25.0 3.08e-01 81.0% 74.7%
4980649 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.50 23.0 2.81e-01 84.5% 64.8%