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NC_031938.1__YP_009324568.1__BOW78_gp45__00045

Bact-Vir

NC_031938.1__YP_009324568.1__BOW78_gp45__00045

Identity

Accession:
NC_031938 ↗
Kingdom:
phage

Quality

95.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Flavobacterium_phage_Fpv6

TaxID: 1814286

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-71
PDB
Domain cluster: rep: NC_049856.1__YP_009905497.1__H1Z35_gp079__00172__D8-71
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 55.0 5.45e-01 100.0% 63.8%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 55.0 5.57e-01 100.0% 69.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.81 53.0 6.07e-01 100.0% 91.7%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.80 59.0 6.22e-01 100.0% 86.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 60.0 6.18e-01 100.0% 83.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.80 64.0 6.52e-01 100.0% 88.9%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 55.0 5.39e-01 100.0% 68.1%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 55.0 5.41e-01 100.0% 69.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 52.0 5.44e-01 98.5% 79.7%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 56.0 6.07e-01 100.0% 98.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.35e-01 100.0% 79.0%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 49.0 4.64e-01 75.8% 96.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.73e-01 100.0% 70.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.86e-01 100.0% 87.3%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.63 57.0 5.54e-01 100.0% 93.2%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.97e-01 100.0% 79.7%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 53.0 4.51e-01 93.9% 80.4%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 5.21e-01 100.0% 92.4%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 41.0 4.16e-01 92.4% 71.6%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 3.56e-01 93.9% 65.1%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.57 50.0 4.54e-01 100.0% 73.3%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.56 38.0 2.71e-01 71.2% 75.1%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.56 46.0 3.74e-01 100.0% 46.2%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.56 50.0 3.97e-01 100.0% 72.2%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 47.0 3.70e-01 100.0% 46.0%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.57e-01 86.4% 90.4%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.92e-01 86.4% 69.0%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 32.0 2.76e-01 89.4% 32.2%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.48e-01 90.9% 96.1%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 37.0 3.35e-01 77.3% 95.0%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.36e-01 89.4% 73.9%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 2.90e-01 100.0% 28.4%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.78 54.0 5.69e-01 100.0% 81.4%
3855038 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.77 53.0 3.98e-01 100.0% 30.0%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 62.0 5.19e-01 100.0% 53.6%
4988761 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.70 59.0 5.31e-01 100.0% 67.8%
5052256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 4.87e-01 100.0% 61.1%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.67 53.0 5.13e-01 100.0% 76.0%
4416106 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.66 50.0 4.03e-01 83.3% 66.4%
1549576 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.65 49.0 3.90e-01 81.8% 73.0%
154136 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.64 47.0 2.92e-01 78.8% 81.5%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 43.0 3.67e-01 71.2% 60.0%
4879890 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 42.0 4.08e-01 81.8% 60.5%
5042597 4.15.1.0 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.63 52.0 4.73e-01 100.0% 67.8%
5043132 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.62 49.0 4.53e-01 100.0% 67.1%
4015435 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.61 44.0 4.03e-01 78.8% 98.9%
3650296 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.61 55.0 4.84e-01 100.0% 68.4%
3582847 1.1.2.30 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DUF1758 0.61 43.0 3.61e-01 77.3% 70.4%
4024016 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 47.0 3.90e-01 87.9% 58.4%
None — 0.60 44.0 2.80e-01 83.3% 31.6%
3411858 4.1.1.456 ↗ beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.60 51.0 3.13e-01 100.0% 15.0%
3358748 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.59 53.0 4.99e-01 100.0% 83.7%
3508573 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 46.0 4.04e-01 87.9% 72.4%
3655111 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.12e-01 100.0% 55.5%
5000523 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 51.0 4.26e-01 100.0% 60.0%
5077400 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 37.0 3.24e-01 93.9% 39.4%
4386715 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.59 53.0 4.86e-01 100.0% 88.2%
3393168 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 45.0 3.93e-01 89.4% 75.5%
3474148 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 3.80e-01 89.4% 75.8%
4214117 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.56 49.0 3.49e-01 100.0% 72.4%
3167022 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.56 48.0 2.88e-01 97.0% 13.2%
3893639 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.55 47.0 2.92e-01 97.0% 21.3%
3647116 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.54 45.0 3.81e-01 98.5% 60.0%
3828737 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.54 43.0 3.54e-01 87.9% 78.3%
5059308 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.54 45.0 3.08e-01 95.5% 61.6%
4952318 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 3.92e-01 78.8% 100.0%
5027758 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.53 43.0 3.32e-01 90.9% 62.6%
3584039 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.53 39.0 2.50e-01 83.3% 90.4%
364017 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.53 42.0 2.75e-01 95.5% 43.6%
4438762 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.53 42.0 3.94e-01 90.9% 77.6%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 42.0 3.17e-01 100.0% 35.1%
5028974 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.51 42.0 3.60e-01 100.0% 54.0%
None — 0.51 38.0 2.51e-01 81.8% 58.1%
4086880 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.51 45.0 3.48e-01 100.0% 91.3%