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NC_031940.1__YP_009324761.1__BOW93_gp050__00050
Bact-VirNC_031940.1__YP_009324761.1__BOW93_gp050__00050
Identity
- Accession:
- NC_031940 ↗
- Kingdom:
- phage
Quality
57.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 78-137
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.74 | 51.0 | 4.13e-01 | 76.7% | 39.1% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.71 | 58.0 | 5.17e-01 | 91.7% | 71.6% |
| 1k8kG00 | 1.25.40.190 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 | 0.71 | 53.0 | 4.13e-01 | 83.3% | 37.4% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 47.0 | 4.76e-01 | 73.3% | 71.2% |
| 3ix7A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.69 | 51.0 | 3.95e-01 | 78.3% | 45.8% |
| 3gs3A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.69 | 55.0 | 3.65e-01 | 88.3% | 22.5% |
| 2l1lB00 | 1.20.1440.250 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.69 | 54.0 | 4.30e-01 | 88.3% | 46.5% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 59.0 | 4.22e-01 | 100.0% | 57.0% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.68 | 46.0 | 4.40e-01 | 80.0% | 60.6% |
| 3fb2A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 51.0 | 4.32e-01 | 83.3% | 83.8% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 45.0 | 4.52e-01 | 80.0% | 71.0% |
| 2vklA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.64 | 51.0 | 4.84e-01 | 93.3% | 83.1% |
| 2e8gA01 | 1.20.1440.150 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.64 | 52.0 | 4.09e-01 | 88.3% | 79.8% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.64 | 43.0 | 4.02e-01 | 70.0% | 93.4% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.64 | 51.0 | 3.74e-01 | 91.7% | 33.7% |
| 2wm3A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.64 | 44.0 | 3.65e-01 | 71.7% | 84.3% |
| 4l9aA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.64 | 46.0 | 3.05e-01 | 95.0% | 17.6% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.61 | 44.0 | 4.28e-01 | 76.7% | 88.1% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 46.0 | 4.54e-01 | 80.0% | 75.0% |
| 1l5jA01 | 1.25.40.310 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Aconitate B, HEAT-like domain | 0.61 | 45.0 | 3.42e-01 | 90.0% | 31.1% |
| 5hdiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 52.0 | 3.21e-01 | 100.0% | 40.8% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.61 | 44.0 | 3.92e-01 | 76.7% | 62.4% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 43.0 | 3.64e-01 | 100.0% | 42.5% |
| 1bhaA00 | 1.10.287.170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 41.0 | 3.95e-01 | 83.3% | 64.2% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 42.0 | 4.29e-01 | 76.7% | 82.8% |
| 3i6iA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.57 | 44.0 | 3.58e-01 | 85.0% | 79.5% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 48.0 | 3.98e-01 | 91.7% | 85.7% |
| 1eteA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 44.0 | 3.45e-01 | 86.7% | 76.9% |
| 3kaeA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 47.0 | 3.29e-01 | 100.0% | 44.0% |
| 3c2gA02 | 1.10.10.1630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like | 0.56 | 44.0 | 4.24e-01 | 86.7% | 76.5% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.56 | 43.0 | 3.95e-01 | 81.7% | 82.9% |
| 1ryuA00 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.55 | 44.0 | 3.66e-01 | 93.3% | 89.2% |
| 3mekA04 | 1.25.40.970 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 42.0 | 3.92e-01 | 86.7% | 72.5% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.55 | 42.0 | 4.15e-01 | 81.7% | 85.9% |
| 3ck6C02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.55 | 45.0 | 3.74e-01 | 98.3% | 83.2% |
| 1l7aA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 43.0 | 2.80e-01 | 91.7% | 17.9% |
| 3vldA02 | 1.25.40.580 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 45.0 | 3.47e-01 | 96.7% | 77.8% |
| 1hypA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.53 | 39.0 | 3.76e-01 | 86.7% | 68.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3256551 | 109.4.1.1323 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IMB1 | 0.77 | 66.0 | 3.94e-01 | 95.0% | 24.3% |
| 3682624 | 109.4.1.3042 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HDS, Sec7-like_HUS, Mon2_C, DCB | 0.73 | 60.0 | 3.26e-01 | 90.0% | 11.3% |
| 4083492 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.73 | 46.0 | 4.52e-01 | 83.3% | 60.0% |
| 4426080 | 109.4.1.934 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR | 0.72 | 61.0 | 5.12e-01 | 100.0% | 94.5% |
| 3701219 | 109.4.1.33 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT | 0.71 | 58.0 | 3.68e-01 | 88.3% | 36.5% |
| 3811477 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.71 | 57.0 | 5.13e-01 | 90.0% | 69.4% |
| 3605875 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.70 | 53.0 | 4.35e-01 | 83.3% | 82.6% |
| 3613525 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 61.0 | 4.01e-01 | 100.0% | 53.3% |
| 3737968 | 611.3.1.1 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 | 0.70 | 56.0 | 5.15e-01 | 88.3% | 68.8% |
| 3290203 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.67 | 56.0 | 4.73e-01 | 95.0% | 97.1% |
| 1346823 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.67 | 45.0 | 4.44e-01 | 73.3% | 65.6% |
| 197702 | 633.15.1.2 ↗ | alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › Alpha_Helical | 0.64 | 52.0 | 4.06e-01 | 88.3% | 78.0% |
| 3742145 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 50.0 | 3.73e-01 | 88.3% | 69.1% |
| 3252622 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.63 | 50.0 | 4.35e-01 | 88.3% | 84.2% |
| 3629293 | 109.4.1.1222 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PSME4 | 0.63 | 54.0 | 3.72e-01 | 100.0% | 52.4% |
| 4051951 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.61 | 46.0 | 4.01e-01 | 80.0% | 74.4% |
| 5067572 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.61 | 53.0 | 4.44e-01 | 98.3% | 89.5% |
| 5078048 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 44.0 | 4.13e-01 | 76.7% | 86.7% |
| 3386594 | 3291.1.1.197 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › MCPsignal | 0.61 | 47.0 | 3.83e-01 | 83.3% | 46.7% |
| 3993403 | 616.1.1.26 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › NPP-6_helical | 0.61 | 46.0 | 3.48e-01 | 85.0% | 56.9% |
| 5048929 | 605.6.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like | 0.61 | 43.0 | 4.16e-01 | 76.7% | 67.1% |
| 3918080 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 51.0 | 4.35e-01 | 98.3% | 91.0% |
| 3738877 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.59 | 47.0 | 3.92e-01 | 88.3% | 72.4% |
| 3505494 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.58 | 46.0 | 3.20e-01 | 90.0% | 25.0% |
| 4379330 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.56 | 49.0 | 4.97e-01 | 98.3% | 98.3% |
| 3755128 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.56 | 47.0 | 4.13e-01 | 98.3% | 97.9% |
| 5067623 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 46.0 | 3.85e-01 | 98.3% | 94.5% |
| 3917098 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.53 | 45.0 | 2.69e-01 | 100.0% | 74.5% |