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NC_031941.1__YP_009324882.1__BOX01_gp36__00036

Bact-Vir

Identity

Accession:: NC_031941 ↗
Kingdom:: phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Medawarvirus› Streptococcus_phage_phiARI0131-2

TaxID: 1701814

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 69-135

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF14472.12 best	DUF4429	29.8	1.10e-06	86.6%	64.2%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2w9jA00	3.30.720.10	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1	0.62	47.0	4.67e-01	94.0%	78.9%
2q18X01	3.10.330.40	Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 ›	0.57	34.0	3.44e-01	94.0%	57.1%
4qjvB00	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.55	46.0	4.10e-01	92.5%	93.6%
3jtzA00	3.30.160.390	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain	0.54	41.0	3.97e-01	92.5%	71.4%
4a18O00	3.30.390.110	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 ›	0.53	41.0	3.37e-01	92.5%	43.3%
6yfiB01	3.30.380.10	Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein	0.50	37.0	2.96e-01	79.1%	69.6%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4972931	220.1.1.321 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF4429	0.92	85.0	6.76e-01	100.0%	54.4%
3587162	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.88	81.0	6.06e-01	100.0%	43.8%
3718387	220.1.1.10 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog	0.61	54.0	4.43e-01	100.0%	58.4%
3583072	304.34.1.0 ↗	a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases	0.61	48.0	4.02e-01	86.6%	97.4%
4023588	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.55	49.0	3.56e-01	100.0%	57.3%
3482979	4246.1.1.2 ↗	a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1	0.55	47.0	2.90e-01	95.5%	76.7%
4014900	2485.1.1.0 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like	0.54	45.0	4.00e-01	97.0%	97.1%
4511042	5090.1.1.7 ↗	beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › HAP2-GCS1	0.54	46.0	2.83e-01	94.0%	82.2%
3794522	2488.1.1.7 ↗	a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1	0.54	44.0	3.58e-01	100.0%	96.0%
3591979	77.2.1.1 ↗	beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN	0.53	47.0	3.59e-01	98.5%	65.2%
1807455	3209.1.1.1 ↗	a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e	0.53	41.0	3.37e-01	92.5%	43.3%
3041206	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.52	35.0	3.10e-01	70.1%	61.9%
3263342	109.21.1.4 ↗	alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16	0.51	39.0	2.50e-01	88.1%	94.1%