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NC_031942.1__YP_009324901.1__BOW99_gp18__00018

Bact-Vir

NC_031942.1__YP_009324901.1__BOW99_gp18__00018

Identity

Accession:
NC_031942 ↗
Kingdom:
phage

Quality

97.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hinxtonvirus› Streptococcus_phage_phiARI0462

TaxID: 1701826

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-77
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13328.13 best HD_4 28.1 2.10e-06 94.8% 46.2%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7smgD00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.99 96.0 7.48e-01 100.0% 54.2%
1vj7B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.94 89.0 6.60e-01 100.0% 46.2%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.91 86.0 6.23e-01 100.0% 44.4%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.75 67.0 6.41e-01 100.0% 94.4%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.74 67.0 6.43e-01 100.0% 94.3%
7jveC01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 49.0 3.48e-01 84.4% 26.9%
1r2jA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 54.0 4.40e-01 94.8% 83.3%
2py6A01 1.20.1270.160 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 52.0 5.40e-01 92.2% 100.0%
1chkA01 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.62 49.0 4.12e-01 89.6% 55.9%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.61 52.0 4.06e-01 100.0% 90.8%
5iduC03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 49.0 3.97e-01 92.2% 66.7%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 49.0 4.07e-01 89.6% 73.8%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 48.0 3.91e-01 89.6% 67.1%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.59 48.0 4.61e-01 90.9% 80.4%
1wixA01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.59 50.0 4.15e-01 100.0% 92.8%
2rq1A00 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.58 40.0 3.60e-01 71.4% 89.9%
2ix5A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.58 46.0 3.77e-01 89.6% 68.4%
5zw7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 46.0 3.79e-01 90.9% 69.1%
3k1rB00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.57 40.0 4.09e-01 72.7% 75.7%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 44.0 4.19e-01 85.7% 84.9%
2v57A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 38.0 3.00e-01 70.1% 65.5%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.56 47.0 3.93e-01 97.4% 80.9%
4r2fA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 36.0 2.73e-01 70.1% 71.9%
3e4bA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 39.0 2.52e-01 79.2% 24.6%
1y8aA02 1.10.3870.10 Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily 0.53 46.0 4.03e-01 96.1% 94.0%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 40.0 4.14e-01 83.1% 94.7%
4giwB00 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.53 41.0 3.32e-01 89.6% 88.2%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 42.0 3.60e-01 92.2% 66.2%
2n50A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.52 38.0 3.86e-01 96.1% 78.5%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 40.0 3.38e-01 89.6% 68.5%
1khdD02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.50 38.0 2.90e-01 85.7% 87.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960277 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.99 97.0 7.48e-01 100.0% 54.5%
4822932 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.99 95.0 8.57e-01 100.0% 77.8%
4959337 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.98 95.0 7.43e-01 100.0% 55.0%
3683167 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.95 91.0 6.51e-01 100.0% 42.1%
4606782 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.95 91.0 6.66e-01 100.0% 46.3%
3265073 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.95 91.0 6.40e-01 100.0% 41.5%
3668020 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.95 91.0 6.36e-01 100.0% 39.5%
3584809 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.95 90.0 6.45e-01 100.0% 43.5%
3961396 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.94 89.0 6.42e-01 100.0% 42.1%
4215090 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.94 89.0 6.26e-01 100.0% 39.0%
3386161 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.93 88.0 6.21e-01 100.0% 39.0%
3973478 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.92 87.0 6.41e-01 100.0% 48.6%
4929438 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.89 85.0 6.11e-01 100.0% 42.1%
3964980 131.1.1.12 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.86 80.0 5.76e-01 100.0% 40.5%
5001424 2004.1.2.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › ADK 0.62 53.0 3.86e-01 96.1% 52.3%
3723686 3621.1.1.0 ↗ alpha arrays › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain 0.62 46.0 4.20e-01 77.9% 97.0%
3959716 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.62 50.0 4.50e-01 90.9% 92.7%
3664902 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.59 50.0 4.70e-01 98.7% 88.0%
3386797 4964.1.1.1 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.56 42.0 3.11e-01 83.1% 36.6%
3738736 101.1.1.28 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SWIRM 0.54 44.0 4.09e-01 93.5% 84.0%
3589835 5069.1.3.26 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF1622 0.53 36.0 3.27e-01 70.1% 88.2%
4976309 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 43.0 3.97e-01 98.7% 81.0%
3600841 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.51 40.0 3.04e-01 88.3% 45.9%
4826576 150.1.1.5 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 0.51 38.0 3.70e-01 80.5% 87.1%
3431770 148.1.3.180 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › zf-RVT 0.50 41.0 3.40e-01 93.5% 92.7%
D2 medium residues 78-137
PDB
Domain cluster: rep: PH2015_14_scaffold_1_prodigal-single.1__X__X__00198__D94-145