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NC_034248.1__YP_009352372.1__B7L88_gp129__00115

Bact-Vir

NC_034248.1__YP_009352372.1__B7L88_gp129__00115

Identity

Accession:
NC_034248 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 108-170
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b0oF01 1.10.220.150 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein 0.77 61.0 4.80e-01 95.2% 43.8%
6jmtB01 1.10.220.150 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein 0.73 59.0 4.94e-01 92.1% 51.9%
2csvA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.70 48.0 4.59e-01 88.9% 62.5%
2cklA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 50.0 4.37e-01 79.4% 61.2%
2bayE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 50.0 5.14e-01 79.4% 94.9%
5trbA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 50.0 4.86e-01 79.4% 81.2%
2djaA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.66 43.0 3.95e-01 77.8% 50.0%
2yvrA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.66 42.0 4.70e-01 77.8% 91.1%
2ffwA00 4.10.830.40 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › 0.63 45.0 4.22e-01 92.1% 61.5%
2yhoE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 46.0 4.49e-01 79.4% 71.4%
4r7eA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 46.0 4.48e-01 79.4% 79.7%
2csyA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 45.0 4.58e-01 79.4% 90.0%
1z6uA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 45.0 3.76e-01 79.4% 49.6%
3lrqB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 44.0 4.18e-01 79.4% 70.0%
2yu4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 44.0 3.98e-01 81.0% 70.2%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 47.0 4.13e-01 88.9% 70.7%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 42.0 3.86e-01 74.6% 74.4%
2y43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 43.0 3.92e-01 79.4% 63.6%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 42.0 4.35e-01 81.0% 100.0%
2ma6A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 42.0 4.32e-01 79.4% 85.2%
6k2kA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 41.0 4.28e-01 77.8% 91.2%
1twfL00 2.20.28.30 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L 0.54 33.0 3.69e-01 79.4% 82.6%
3ngxA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.52 36.0 3.37e-01 77.8% 56.0%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3641415 377.1.1.101 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-B_box 0.78 54.0 6.13e-01 77.8% 100.0%
3522307 904.1.1.3 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX 0.77 52.0 5.88e-01 76.2% 97.8%
3437766 377.9.1.23 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-B_box 0.77 53.0 6.04e-01 76.2% 100.0%
3347552 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.77 55.0 5.79e-01 79.4% 85.5%
3357823 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.77 55.0 5.60e-01 79.4% 78.3%
3664680 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.77 54.0 4.71e-01 79.4% 49.5%
3522312 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.77 55.0 5.85e-01 82.5% 87.3%
3662931 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.76 54.0 5.88e-01 93.7% 94.0%
3345514 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.76 54.0 5.88e-01 79.4% 94.0%
3424317 904.1.1.3 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX 0.76 52.0 5.89e-01 77.8% 100.0%
4024131 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.75 55.0 5.97e-01 82.5% 98.0%
3619152 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.75 53.0 5.45e-01 81.0% 78.3%
3890373 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.75 52.0 5.70e-01 79.4% 92.0%
3885685 904.1.1.11 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-UBP 0.74 50.0 5.76e-01 77.8% 100.0%
3229366 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.73 55.0 5.86e-01 82.5% 92.7%
3806561 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 55.0 5.35e-01 81.0% 77.1%
3895529 904.1.1.35 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-UBP_var 0.72 48.0 5.41e-01 74.6% 97.8%
3670642 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.72 60.0 5.95e-01 92.1% 95.4%
3871920 73.1.1.13 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › Pellino_RING 0.72 51.0 4.27e-01 76.2% 61.8%
3997707 376.1.1.75 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Pellino_RING 0.71 50.0 4.64e-01 74.6% 86.3%
3305957 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.71 55.0 5.85e-01 87.3% 96.4%
3364276 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.71 51.0 5.64e-01 77.8% 98.0%
3251812 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.70 50.0 5.49e-01 79.4% 96.0%
3537144 904.1.1.3 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX 0.70 49.0 5.30e-01 74.6% 92.0%
3480920 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.69 51.0 4.20e-01 79.4% 52.2%
3193967 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 51.0 4.46e-01 79.4% 56.8%
3411064 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 49.0 5.32e-01 74.6% 98.0%
3690337 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.69 50.0 4.74e-01 77.8% 73.3%
3552779 904.1.1.3 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX 0.68 47.0 5.01e-01 74.6% 83.6%
3416902 192.8.1.119 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › zf-C3HC4 0.68 50.0 3.20e-01 79.4% 17.8%
3915620 904.1.1.3 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › ANCHR-like_BBOX 0.68 49.0 5.32e-01 81.0% 98.0%
3812096 105.2.1.11 alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C › zf-C3HC4_3 0.68 49.0 3.25e-01 77.8% 21.2%
4528585 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.67 49.0 3.29e-01 77.8% 22.6%
4564843 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.67 49.0 4.10e-01 79.4% 49.1%
3570018 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.67 49.0 3.15e-01 79.4% 17.8%
3485528 5046.1.1.194 extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › zf-C3HC4 0.67 49.0 3.28e-01 79.4% 21.5%
3829429 192.8.1.132 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › zf-C3HC4_3 0.67 49.0 3.54e-01 77.8% 30.9%
4148983 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.67 48.0 4.84e-01 77.8% 83.1%
3452792 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.67 49.0 4.39e-01 79.4% 61.1%
3933070 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.67 49.0 4.77e-01 79.4% 80.0%
3886054 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.67 49.0 5.16e-01 81.0% 90.9%
3511172 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.66 48.0 3.38e-01 77.8% 26.8%
4630831 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.66 45.0 4.05e-01 71.4% 56.7%
3668905 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.66 48.0 4.04e-01 77.8% 49.1%
3667523 192.8.1.119 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › zf-C3HC4 0.66 49.0 3.25e-01 79.4% 21.6%
3180912 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.66 48.0 3.50e-01 77.8% 31.6%
3361545 904.1.1.1 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.66 56.0 4.51e-01 93.7% 75.6%
3521610 376.1.1.73 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ANCHR-like_BBOX 0.66 47.0 5.15e-01 79.4% 100.0%
3464292 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.66 47.0 3.53e-01 77.8% 32.5%
3889970 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.66 48.0 5.22e-01 81.0% 100.0%
3760308 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.65 48.0 5.07e-01 81.0% 94.5%
3902772 376.1.1.8 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.65 48.0 4.65e-01 79.4% 78.6%
3348384 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 47.0 4.58e-01 77.8% 77.1%
4515977 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 45.0 3.70e-01 73.0% 44.3%
3929687 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.65 47.0 4.73e-01 79.4% 83.1%
4529546 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.64 44.0 3.79e-01 73.0% 48.6%
4488278 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.64 44.0 3.53e-01 73.0% 39.2%
3532788 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.64 48.0 4.90e-01 81.0% 90.0%
4206364 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 48.0 4.12e-01 81.0% 54.0%
4011231 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 45.0 4.19e-01 74.6% 75.0%
3780886 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.64 47.0 3.83e-01 81.0% 48.8%
3709187 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.63 47.0 4.51e-01 87.3% 68.0%
3410252 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.63 46.0 4.53e-01 79.4% 81.4%
3600248 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 46.0 4.26e-01 79.4% 66.7%
3312159 904.1.1.27 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box, ANCHR-like_BBOX 0.63 56.0 4.76e-01 100.0% 87.6%
3314956 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 45.0 4.87e-01 77.8% 96.0%
3422810 376.1.1.74 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_XB3-XBAT31 0.62 46.0 4.34e-01 81.0% 83.7%
3532763 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.62 44.0 4.67e-01 77.8% 98.2%
4012449 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.62 45.0 4.15e-01 79.4% 63.5%
3776722 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.62 46.0 4.87e-01 84.1% 96.4%
3354575 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.61 46.0 3.85e-01 82.5% 51.3%
3822895 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.61 45.0 4.56e-01 79.4% 79.4%
3397204 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 45.0 3.89e-01 79.4% 62.0%
3778751 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.61 44.0 3.71e-01 79.4% 62.6%
3728378 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.61 45.0 4.14e-01 81.0% 69.4%
3688647 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.60 44.0 4.00e-01 81.0% 63.4%
4252085 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 42.0 4.62e-01 74.6% 96.0%
4332197 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 44.0 3.99e-01 81.0% 80.0%
3254172 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.60 44.0 3.05e-01 81.0% 23.5%
4190899 377.1.1.11 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.59 51.0 3.74e-01 96.8% 50.0%
3414074 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 41.0 4.40e-01 74.6% 100.0%
4027994 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 42.0 4.24e-01 79.4% 87.7%
4272127 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 42.0 3.77e-01 79.4% 56.8%
3327153 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 39.0 4.01e-01 71.4% 80.0%
3531184 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.58 43.0 3.94e-01 81.0% 63.5%
3899147 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.57 42.0 4.13e-01 100.0% 72.9%
3420754 376.1.3.11 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 0.57 38.0 3.31e-01 95.2% 43.0%
3313010 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 41.0 4.42e-01 100.0% 98.0%
3540501 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.57 41.0 4.18e-01 77.8% 81.7%
3530625 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.56 48.0 4.58e-01 100.0% 90.7%
3308237 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.50 39.0 3.87e-01 100.0% 81.4%