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NC_034248.1__YP_009352383.1__B7L88_gp118__00126
Bact-VirNC_034248.1__YP_009352383.1__B7L88_gp118__00126
Identity
- Accession:
- NC_034248 ↗
- Kingdom:
- phage
Quality
78.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-71
Domain cluster:
rep: MT188704.1__QIV65813.1__Cp1R7AA1_189__00162__D5-66
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w36B03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.83 | 43.0 | 2.72e-01 | 70.6% | 11.7% |
| 3qphA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 54.0 | 4.77e-01 | 75.0% | 49.5% |
| 7wu7501 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 53.0 | 4.31e-01 | 82.4% | 76.2% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.67 | 48.0 | 3.10e-01 | 76.5% | 25.3% |
| 6whpA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.65 | 51.0 | 3.43e-01 | 86.8% | 81.2% |
| 7sf8A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.64 | 54.0 | 3.67e-01 | 92.6% | 50.2% |
| 3ztvA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.62 | 44.0 | 2.81e-01 | 75.0% | 98.6% |
| 2k5cA00 | 3.10.20.830 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bifunctional heparan sulphate n-deacetylase/n-sulphotransferase | 0.60 | 42.0 | 3.91e-01 | 73.5% | 86.4% |
| 2jiiA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 43.0 | 3.04e-01 | 75.0% | 37.5% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.58 | 36.0 | 3.01e-01 | 83.8% | 36.1% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.58 | 48.0 | 3.65e-01 | 91.2% | 80.1% |
| 4jaqA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.57 | 36.0 | 2.88e-01 | 72.1% | 29.7% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.55 | 44.0 | 4.25e-01 | 88.2% | 94.8% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.04e-01 | 75.0% | 56.8% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.53 | 36.0 | 2.75e-01 | 86.8% | 25.9% |
| 1xfjA00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.52 | 41.0 | 2.83e-01 | 89.7% | 50.0% |
| 6a80A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 40.0 | 3.33e-01 | 83.8% | 92.6% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 37.0 | 3.40e-01 | 82.4% | 70.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3609216 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 61.0 | 3.44e-01 | 85.3% | 12.4% |
| 3267186 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.76 | 62.0 | 5.79e-01 | 89.7% | 89.4% |
| 2122010 | 5077.1.1.1 ↗ | extended segments › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chloroa_b-bind | 0.74 | 51.0 | 3.64e-01 | 83.8% | 24.9% |
| 3749051 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.72 | 57.0 | 3.76e-01 | 83.8% | 85.0% |
| 3600710 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 54.0 | 3.62e-01 | 79.4% | 45.3% |
| 4978597 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.71 | 52.0 | 3.79e-01 | 77.9% | 30.8% |
| 4643578 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.70 | 52.0 | 4.18e-01 | 82.4% | 42.4% |
| 3274487 | 605.1.1.155 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 | 0.70 | 54.0 | 3.93e-01 | 82.4% | 46.3% |
| 3873955 | 7016.1.1.0 ↗ | extended segments › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain | 0.69 | 53.0 | 3.99e-01 | 80.9% | 86.5% |
| 3584535 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.69 | 54.0 | 3.31e-01 | 83.8% | 86.3% |
| 3324543 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.67 | 54.0 | 3.54e-01 | 86.8% | 70.5% |
| 3172862 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.65 | 49.0 | 3.27e-01 | 80.9% | 30.6% |
| 3197800 | 221.13.1.2 ↗ | a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain › RRG1_C | 0.63 | 57.0 | 4.21e-01 | 100.0% | 40.6% |
| 4181241 | 109.4.1.2074 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF25873 | 0.62 | 54.0 | 3.22e-01 | 100.0% | 59.8% |
| 3295705 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.62 | 44.0 | 3.46e-01 | 73.5% | 93.3% |
| 3410018 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.62 | 55.0 | 3.41e-01 | 100.0% | 73.6% |
| 3708366 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.61 | 51.0 | 3.88e-01 | 92.6% | 75.6% |
| 3658365 | 3543.1.1.4 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 | 0.59 | 54.0 | 3.50e-01 | 100.0% | 46.0% |
| 4663376 | 3593.1.1.1 ↗ | a+b complex topology › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › CagA_N | 0.59 | 50.0 | 3.09e-01 | 92.6% | 62.8% |
| 4026266 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.59 | 52.0 | 3.49e-01 | 100.0% | 85.3% |
| 5071471 | 3003.1.1.1 ↗ | a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N | 0.58 | 44.0 | 3.80e-01 | 79.4% | 89.5% |
| 3732219 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.58 | 50.0 | 3.19e-01 | 100.0% | 28.1% |
| 3396506 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.57 | 51.0 | 3.63e-01 | 100.0% | 47.0% |
| 3929748 | 109.4.1.1303 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N, HAT_PRP39_C | 0.57 | 41.0 | 2.66e-01 | 80.9% | 34.2% |
| 3819271 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.54 | 39.0 | 4.00e-01 | 76.5% | 78.5% |
| 5037358 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.54 | 42.0 | 3.15e-01 | 86.8% | 89.7% |
| 3515349 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.53 | 43.0 | 2.83e-01 | 89.7% | 52.8% |
| 1218236 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.51 | 35.0 | 3.28e-01 | 79.4% | 55.7% |
| 3620425 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.50 | 31.0 | 2.67e-01 | 70.6% | 38.1% |