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NC_034248.1__YP_009352419.1__B7L88_gp082__00162

Bact-Vir

Identity

Accession:: NC_034248 ↗
Kingdom:: phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHEph10

TaxID: 1220717

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-116

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3mk7C01	6.10.280.130	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	31.0	3.37e-01	77.7%	51.1%
7sk7A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.57	44.0	3.41e-01	83.0%	83.4%
3akjA02	1.10.1070.20	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 ›	0.55	38.0	3.16e-01	70.5%	81.1%
1mhyD00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.55	45.0	2.85e-01	85.7%	31.4%
3syjA02	2.160.20.20	Mainly Beta › 3 Solenoid › Pectate Lyase C-like ›	0.52	37.0	2.35e-01	75.0%	62.1%
4oa3A00	3.10.310.50	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 ›	0.51	36.0	3.35e-01	71.4%	73.0%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5027304	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.71	43.0	3.61e-01	74.1%	38.9%
3506917	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.67	53.0	4.24e-01	83.0%	85.1%
4816472	5073.1.1.0 ↗	alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M	0.63	37.0	3.66e-01	87.5%	55.1%
3877742	5001.1.1.5 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3	0.63	44.0	3.34e-01	73.2%	81.5%
3270655	5001.1.1.5 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3	0.60	47.0	3.60e-01	83.0%	83.0%
3918382	2004.1.1.433 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23	0.60	49.0	3.12e-01	88.4%	17.9%
3793090	2004.1.1.87 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N	0.60	51.0	3.44e-01	91.1%	31.0%
4991922	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.59	42.0	3.56e-01	92.0%	43.1%
3221653	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.58	45.0	3.17e-01	83.0%	73.9%
3628638	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.56	44.0	3.26e-01	85.7%	77.8%
3239359	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.56	44.0	3.18e-01	83.9%	73.5%
4315686	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.55	47.0	3.34e-01	92.9%	71.9%
5000798	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.54	42.0	3.55e-01	82.1%	68.6%
3750883	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.54	44.0	3.72e-01	85.7%	93.1%
3699463	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.54	48.0	3.81e-01	95.5%	80.5%
None	—		0.53	42.0	3.01e-01	84.8%	69.2%
3632975	3447.1.1.1 ↗	alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › ERG4_ERG24	0.52	42.0	3.30e-01	86.6%	71.2%
3224269	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.50	44.0	3.17e-01	100.0%	89.7%