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YP_009362545.1

Arc-Vir

NC_034619__YP_009362545.1__CCL43-gp45__00045

Identity

Accession:
NC_034619 ↗
Protein ID:
YP_009362545.1 ↗
Kingdom:
archaea

Quality

93.4 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Rudiviridae› Usarudivirus› Sulfolobus_islandicus_rod-shaped_virus_7

TaxID: 1983550

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-86_166-214
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 32.0 3.59e-01 73.0% 54.0%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 32.0 3.36e-01 72.2% 48.7%
2hmcA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 47.0 3.47e-01 90.5% 86.6%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 3.58e-01 84.9% 98.2%
4kd6A00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 38.0 3.29e-01 74.6% 92.1%
3ofnY00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.52 38.0 4.00e-01 74.6% 98.3%
3u31A01 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.52 38.0 3.46e-01 76.2% 86.6%
2bs2A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.19e-01 92.1% 95.7%
4c3xA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 2.94e-01 86.5% 97.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3405303 2002.1.1.73 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.83 58.0 3.94e-01 71.4% 50.4%
4385959 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.74 52.0 4.17e-01 72.2% 62.4%
5037153 7592.1.1.1 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Cas_NE0113 0.56 42.0 3.41e-01 79.4% 71.0%
3890813 2007.9.1.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › SEFIR 0.55 39.0 3.38e-01 73.8% 100.0%
3617270 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.53 38.0 3.67e-01 73.0% 67.9%
3267886 4177.1.1.8 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.51 43.0 3.33e-01 87.3% 83.1%
D2 high residues 89-159
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7b7tA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 43.0 3.34e-01 81.7% 41.6%
1b7eA02 1.10.740.10 Mainly Alpha › Orthogonal Bundle › Transferase Inhibitor Protein From Tn5; Chain A, domain2 › Transferase Inhibitor Protein From Tn5; Chain 0.55 43.0 3.64e-01 87.3% 69.8%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.53 30.0 3.51e-01 87.3% 79.6%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.53 44.0 3.42e-01 97.2% 49.7%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.52 36.0 2.68e-01 71.8% 74.3%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990831 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.89 83.0 5.29e-01 100.0% 25.9%
5074917 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.76 69.0 4.35e-01 100.0% 22.0%
4440687 5060.1.1.2 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › DUF2764 0.59 45.0 3.19e-01 84.5% 32.9%
3761598 2008.1.1.29 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.57 39.0 2.57e-01 70.4% 29.7%
3574531 193.1.1.1 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH 0.56 48.0 3.76e-01 100.0% 71.9%
3593910 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.54 45.0 3.31e-01 95.8% 81.5%
4025067 247.1.1.5 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C 0.53 45.0 3.05e-01 98.6% 53.8%
3883661 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 38.0 3.32e-01 78.9% 76.4%
5013701 3572.1.1.2 ↗ a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.51 38.0 3.40e-01 81.7% 96.2%