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YP_009362769.1
Arc-VirNC_034624__YP_009362769.1__CCL47-gp35__00035
Identity
- Accession:
- NC_034624 ↗
- Protein ID:
- YP_009362769.1 ↗
- Kingdom:
- archaea
Quality
86.0
mean pLDDT
Taxonomy
Zilligvirae›
Taleaviricota›
Tokiviricetes›
Ligamenvirales›
Rudiviridae›
Usarudivirus›
Sulfolobus_islandicus_rod-shaped_virus_11
TaxID: 1983546
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-225
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pm4A00 | 2.60.120.510 | Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm | 0.67 | 33.0 | 4.46e-01 | 86.0% | 88.9% |
| 4ohvA01 | 2.60.120.1030 | Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain | 0.67 | 24.0 | 3.88e-01 | 84.2% | 87.5% |
| 2gu9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 25.0 | 3.67e-01 | 74.2% | 73.8% |
| 2qfeA00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 33.0 | 4.21e-01 | 75.1% | 78.4% |
| 2waoA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 28.0 | 3.92e-01 | 72.4% | 82.0% |
| 4yrdA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 27.0 | 3.61e-01 | 86.9% | 74.8% |
| 2pn5A06 | 2.20.130.20 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › | 0.60 | 24.0 | 3.54e-01 | 82.8% | 83.0% |
| 4fcaA01 | 2.60.120.1250 | Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 | 0.60 | 29.0 | 3.87e-01 | 73.3% | 88.1% |
| 3fjsC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 23.0 | 3.32e-01 | 82.8% | 74.8% |
| 3gbwA00 | 2.60.120.820 | Mainly Beta › Sandwich › Jelly Rolls › PHR domain | 0.58 | 35.0 | 4.07e-01 | 80.1% | 81.4% |
| 5fq0A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 24.0 | 3.34e-01 | 79.6% | 76.4% |
| 4aw7A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 23.0 | 3.02e-01 | 78.7% | 66.1% |
| 4ei0A01 | 2.60.40.3550 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 | 0.56 | 31.0 | 3.79e-01 | 83.3% | 83.0% |
| 2wraA00 | 2.60.120.400 | Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin | 0.54 | 28.0 | 3.67e-01 | 83.3% | 88.5% |
| 2w5aA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 16.0 | 3.02e-01 | 76.0% | 92.2% |
| 1fxzA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 31.0 | 3.49e-01 | 84.2% | 75.6% |
| 3s7iB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 32.0 | 3.52e-01 | 88.2% | 73.5% |
| 4b60A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 28.0 | 3.42e-01 | 83.7% | 79.7% |
| 1gqgC02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 31.0 | 3.30e-01 | 91.4% | 66.7% |
| 4jdmA03 | 2.60.120.1340 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 28.0 | 3.30e-01 | 81.0% | 75.3% |
| 1uijB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 28.0 | 3.27e-01 | 83.7% | 72.7% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 31.0 | 3.44e-01 | 95.9% | 73.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3785562 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.71 | 36.0 | 4.62e-01 | 74.7% | 82.3% |
| 3708492 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.68 | 30.0 | 4.27e-01 | 70.1% | 85.7% |
| 3591145 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.67 | 30.0 | 4.16e-01 | 70.1% | 82.7% |
| 3245210 | 10.32.1.213 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 | 0.67 | 35.0 | 4.45e-01 | 79.6% | 84.6% |
| 5048013 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.66 | 28.0 | 4.18e-01 | 70.1% | 89.5% |
| 4935664 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.66 | 30.0 | 4.08e-01 | 79.6% | 80.0% |
| 5041321 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.66 | 32.0 | 4.42e-01 | 84.2% | 88.3% |
| 3222920 | 10.32.1.213 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 | 0.65 | 34.0 | 4.35e-01 | 84.2% | 83.5% |
| 3229198 | 10.32.1.213 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 | 0.62 | 32.0 | 4.21e-01 | 71.0% | 87.2% |
| 3912745 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.62 | 26.0 | 3.55e-01 | 70.6% | 73.0% |
| 4031118 | 10.12.1.100 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Polysacc_synt_C | 0.61 | 28.0 | 3.64e-01 | 86.9% | 74.8% |
| 5056360 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 23.0 | 3.29e-01 | 84.6% | 73.7% |
| 3908242 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 28.0 | 3.62e-01 | 70.1% | 76.8% |
| 3253725 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 30.0 | 3.91e-01 | 83.7% | 86.7% |
| 3708922 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 31.0 | 3.99e-01 | 72.9% | 86.9% |
| 3924093 | 10.4.1.33 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_M02D8_5_3rd | 0.58 | 23.0 | 3.04e-01 | 85.5% | 63.3% |
| 3612751 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 33.0 | 4.08e-01 | 73.3% | 89.3% |
| 1874927 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.55 | 31.0 | 3.68e-01 | 82.4% | 78.8% |
| 3285287 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.54 | 23.0 | 3.16e-01 | 96.4% | 75.7% |
| 3283885 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.53 | 31.0 | 3.46e-01 | 84.2% | 70.6% |
| 5036103 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 27.0 | 3.32e-01 | 83.7% | 76.4% |
| 3453800 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.51 | 30.0 | 2.77e-01 | 85.5% | 42.4% |
| 4439358 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.51 | 34.0 | 2.80e-01 | 90.0% | 37.1% |
| 3611563 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 37.0 | 4.09e-01 | 80.5% | 92.8% |
D2
high
residues 265-383
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1auwA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.64 | 58.0 | 4.69e-01 | 100.0% | 82.0% |
| 3ctwB00 | 1.10.8.930 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 | 0.62 | 34.0 | 3.48e-01 | 100.0% | 53.3% |
| 1bf5A01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.55 | 41.0 | 3.65e-01 | 78.2% | 100.0% |
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.54 | 44.0 | 4.02e-01 | 85.7% | 76.8% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 37.0 | 3.49e-01 | 71.4% | 88.3% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.53 | 37.0 | 3.78e-01 | 71.4% | 77.8% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 38.0 | 4.04e-01 | 100.0% | 84.9% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 38.0 | 3.89e-01 | 100.0% | 78.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3841486 | 3409.1.1.3 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 | 0.74 | 51.0 | 4.72e-01 | 100.0% | 56.0% |
| 3551798 | 3409.1.1.3 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 | 0.63 | 50.0 | 3.94e-01 | 83.2% | 53.9% |
| 3772973 | 3755.3.1.295 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 | 0.62 | 48.0 | 4.00e-01 | 79.8% | 80.5% |
| 3175175 | 3409.1.1.3 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 | 0.58 | 46.0 | 3.49e-01 | 83.2% | 40.7% |
| 4060087 | 3409.1.1.0 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain | 0.58 | 46.0 | 4.12e-01 | 83.2% | 67.9% |
| 3631798 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.57 | 46.0 | 3.58e-01 | 85.7% | 94.2% |
| 3610577 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.56 | 41.0 | 3.87e-01 | 76.5% | 97.9% |
| 55698 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.54 | 38.0 | 3.39e-01 | 72.3% | 76.3% |
| 3287390 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.52 | 47.0 | 4.14e-01 | 100.0% | 72.8% |
| 3578378 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 42.0 | 4.05e-01 | 87.4% | 96.4% |
| 3709728 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 36.0 | 3.12e-01 | 73.1% | 94.2% |
| 3615389 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.50 | 38.0 | 3.37e-01 | 100.0% | 57.0% |
D3
high
residues 388-549
Domain cluster:
rep: MK064565__AZI75926.1__SBRV1-gp37__00037__D359-518
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13349.13 best | DUF4097 | 24.8 | 1.80e-05 | 93.8% | 50.8% |