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YP_009362919.1

Arc-Vir

NC_034628__YP_009362919.1__CCL46-gp01__00001

Identity

Accession:
NC_034628 ↗
Protein ID:
YP_009362919.1 ↗
Kingdom:
archaea

Quality

88.1 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Rudiviridae› Usarudivirus› Sulfolobus_islandicus_rod-shaped_virus_4

TaxID: 1983547

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-103
PDB
Domain cluster: rep: NC_013588__YP_003331501.1__SSSV7-gp18__00018__D26-105
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 50.0 4.12e-01 82.1% 72.2%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 42.0 3.49e-01 96.4% 40.6%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.61 52.0 3.81e-01 90.5% 83.1%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 47.0 4.11e-01 85.7% 86.6%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 46.0 3.21e-01 95.2% 25.1%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.58 47.0 4.31e-01 90.5% 92.0%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 34.0 3.69e-01 85.7% 69.4%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.57 34.0 3.94e-01 83.3% 84.7%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 44.0 4.08e-01 90.5% 88.5%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 42.0 2.93e-01 82.1% 38.9%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 35.0 4.11e-01 90.5% 96.6%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 34.0 3.36e-01 72.6% 58.1%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 46.0 3.96e-01 100.0% 100.0%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 40.0 3.77e-01 98.8% 65.7%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.53 41.0 3.56e-01 100.0% 53.9%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 41.0 2.90e-01 82.1% 98.1%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 40.0 3.36e-01 100.0% 45.6%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.53 43.0 3.40e-01 100.0% 43.6%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 44.0 4.09e-01 90.5% 99.1%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 46.0 4.02e-01 95.2% 87.4%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 36.0 3.69e-01 70.2% 77.5%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.47e-01 72.6% 77.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 35.0 3.79e-01 83.3% 81.7%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 43.0 3.88e-01 90.5% 90.5%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 43.0 3.97e-01 90.5% 88.9%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.52 43.0 3.66e-01 90.5% 77.9%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 42.0 3.78e-01 89.3% 94.0%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.51 37.0 3.86e-01 82.1% 82.1%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 45.0 4.21e-01 98.8% 95.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 30.0 3.25e-01 100.0% 68.1%
1viuC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 39.0 3.13e-01 83.3% 42.0%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.50 41.0 3.58e-01 100.0% 58.4%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 43.0 3.52e-01 96.4% 64.8%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 34.0 3.57e-01 86.9% 78.4%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 38.0 3.60e-01 100.0% 65.7%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718300 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 41.0 4.40e-01 97.6% 62.7%
4931409 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 43.0 3.67e-01 100.0% 40.8%
4954852 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.69 48.0 3.72e-01 100.0% 35.3%
4964696 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.64 40.0 3.56e-01 100.0% 45.2%
5052285 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 39.0 3.68e-01 97.6% 49.5%
3248029 223.7.1.1 ↗ a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.63 40.0 3.33e-01 90.5% 37.2%
5078704 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 43.0 4.19e-01 96.4% 67.8%
3289254 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.60 39.0 3.76e-01 100.0% 57.9%
4514946 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 44.0 3.45e-01 81.0% 89.2%
4405873 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.59 41.0 3.71e-01 76.2% 53.0%
3456692 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.58 35.0 3.94e-01 86.9% 83.1%
3279607 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.58 38.0 3.65e-01 100.0% 57.0%
3603056 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 38.0 4.02e-01 92.9% 74.7%
4025195 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.57 43.0 3.59e-01 84.5% 69.1%
3518991 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.57 43.0 4.56e-01 98.8% 93.3%
3625974 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.56 43.0 4.30e-01 100.0% 78.9%
4362814 7512.1.1.24 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.56 42.0 2.97e-01 81.0% 27.2%
3926114 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.56 48.0 3.55e-01 98.8% 56.6%
4946877 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 45.0 3.02e-01 89.3% 52.6%
3237889 7504.1.1.0 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like 0.54 43.0 3.30e-01 84.5% 58.4%
3941741 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 47.0 3.87e-01 91.7% 58.6%
1148135 295.1.1.11 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › CdiI_N 0.54 47.0 3.98e-01 100.0% 100.0%
5016315 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.54 38.0 3.40e-01 100.0% 50.4%
3245468 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 33.0 2.92e-01 85.7% 43.3%
4945290 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 34.0 3.84e-01 84.5% 90.0%
4137393 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.53 36.0 3.01e-01 88.1% 39.3%
3427875 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.53 41.0 3.36e-01 83.3% 77.4%
5013768 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.53 36.0 3.46e-01 84.5% 62.1%
5025341 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.53 36.0 3.46e-01 82.1% 60.0%
3509080 2484.8.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.53 46.0 3.44e-01 100.0% 82.2%
None — 0.52 35.0 3.57e-01 70.2% 96.5%
5029914 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.52 33.0 3.92e-01 88.1% 100.0%
4026006 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 36.0 3.70e-01 91.7% 75.0%
4117325 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 36.0 3.20e-01 73.8% 51.5%
4524129 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 41.0 3.94e-01 91.7% 76.8%
3819309 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.51 40.0 4.00e-01 96.4% 82.4%
3554073 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 41.0 3.60e-01 90.5% 80.8%
184719 3514.1.1.1 ↗ a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 0.50 41.0 3.58e-01 100.0% 58.4%