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YP_009362963.1

Arc-Vir

NC_034628__YP_009362963.1__CCL46-gp45__00045

Identity

Accession:
NC_034628 ↗
Protein ID:
YP_009362963.1 ↗
Kingdom:
archaea

Quality

85.4 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Rudiviridae› Usarudivirus› Sulfolobus_islandicus_rod-shaped_virus_4

TaxID: 1983547

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-111
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l3aA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 42.0 4.69e-01 100.0% 85.0%
2kpnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 40.0 4.56e-01 100.0% 87.0%
6s5xA01 2.60.40.3600 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 38.0 4.51e-01 100.0% 86.7%
5o60H02 3.10.430.100 Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain 0.61 41.0 4.53e-01 100.0% 85.1%
7oodf01 3.10.430.100 Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain 0.57 36.0 4.17e-01 100.0% 90.8%
4jguA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.97e-01 100.0% 82.1%
4m00A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 4.12e-01 100.0% 90.7%
2yrlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 4.27e-01 100.0% 97.6%
6vg1A06 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 42.0 4.31e-01 100.0% 89.1%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 34.0 2.57e-01 100.0% 24.8%
5oj2B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.78e-01 100.0% 82.6%
5vt8C01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 40.0 4.14e-01 100.0% 87.1%
2x2uA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 40.0 4.07e-01 100.0% 83.8%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 30.0 3.31e-01 84.9% 72.3%
1ulvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.66e-01 98.1% 82.6%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.88e-01 100.0% 81.0%
7sz8A03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 40.0 4.19e-01 100.0% 93.8%
5vh2D01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 40.0 4.13e-01 100.0% 87.4%
8d40A02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 41.0 4.23e-01 100.0% 92.9%
5iryA05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 38.0 4.20e-01 99.1% 100.0%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 35.0 2.99e-01 100.0% 41.3%
6pgwA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 41.0 4.26e-01 100.0% 93.1%
3rfrA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.50 45.0 4.17e-01 100.0% 91.2%
5dzvA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 41.0 4.16e-01 100.0% 87.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000455 523.1.1.3 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.66 51.0 4.83e-01 100.0% 69.6%
2704187 3414.1.1.3 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Bact_surface_Ig-like 0.64 38.0 4.36e-01 100.0% 80.5%
137754 3414.1.1.3 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Bact_surface_Ig-like 0.63 40.0 4.16e-01 100.0% 69.1%
4877957 3414.1.1.2 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Rib 0.63 41.0 3.64e-01 100.0% 45.5%
2557442 3414.1.1.2 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Rib 0.62 40.0 4.45e-01 100.0% 82.9%
4345365 3414.1.1.3 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Bact_surface_Ig-like 0.62 41.0 4.64e-01 100.0% 90.0%
4569147 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.55 37.0 3.93e-01 100.0% 76.6%
3934995 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 36.0 2.82e-01 100.0% 30.4%
5061286 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.55 38.0 4.14e-01 100.0% 88.2%
5080624 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 3.96e-01 100.0% 81.1%
3912681 11.1.1.115 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_pro 0.54 39.0 4.15e-01 100.0% 86.7%
4469404 11.1.1.115 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_pro 0.54 40.0 3.89e-01 100.0% 69.2%
5060214 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 4.27e-01 100.0% 91.1%
5079968 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.54 37.0 3.83e-01 100.0% 76.0%
5030267 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.53 38.0 4.08e-01 100.0% 86.7%
5059707 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.96e-01 100.0% 81.1%
5058700 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.53 37.0 4.01e-01 100.0% 85.6%
5070716 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.83e-01 100.0% 81.1%
1892062 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.53 41.0 4.25e-01 100.0% 88.7%
3558590 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.53 41.0 4.17e-01 100.0% 82.9%
3622255 11.1.1.351 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD 0.52 39.0 4.26e-01 100.0% 93.3%
3905919 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.52 40.0 4.19e-01 100.0% 87.0%
3285565 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 37.0 3.73e-01 98.1% 74.3%
4954200 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 4.19e-01 100.0% 95.3%
3519198 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.98e-01 100.0% 79.1%
3620267 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.52 39.0 4.03e-01 100.0% 84.0%
3570352 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 4.08e-01 100.0% 81.8%
3232359 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.51 39.0 4.01e-01 100.0% 82.9%
4418068 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.51 40.0 4.08e-01 100.0% 84.8%
5068351 11.1.1.249 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_9 0.51 38.0 3.99e-01 100.0% 86.3%
5059894 11.1.1.249 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_9 0.51 40.0 4.02e-01 100.0% 82.9%
5058821 11.1.1.351 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD 0.51 37.0 3.99e-01 100.0% 91.1%
3570932 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.51 39.0 4.08e-01 100.0% 88.0%
3940213 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 4.11e-01 100.0% 88.0%
3927748 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 4.01e-01 100.0% 90.5%
3927937 11.1.1.533 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HYR 0.50 33.0 3.66e-01 100.0% 87.5%
3414418 11.1.1.876 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29962 0.50 40.0 4.07e-01 100.0% 85.7%
3519217 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.50 39.0 4.07e-01 100.0% 89.0%
3582008 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.50 39.0 3.86e-01 100.0% 79.1%
3628303 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.50 39.0 4.02e-01 100.0% 87.0%
D2 high residues 115-190
PDB
Domain cluster: rep: IMGVR_UViG_3300007816_000024-3300007816-Ga0105112_10000391__D9-62