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NC_041832.1__YP_009590743.1__FDG52_s3gp09__00009

Bact-Vir

NC_041832.1__YP_009590743.1__FDG52_s3gp09__00009

Identity

Accession:
NC_041832 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Connertonviridae› Firehammervirus› Campylobacter_phage_vB_CcoM-IBB_35

TaxID: 2920889

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 185-277
PDB
Domain cluster: rep: FN667788.1__CBJ93962.1__CPT_0153__00153__D188-275
D2 medium residues 1-182
PDB
Domain cluster: rep: MK448641.1__QBX13135.1__JavanS753_0014__00014__D40-226
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u7lA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 34.0 4.72e-01 78.6% 95.6%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.68 34.0 4.54e-01 85.7% 89.6%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 32.0 4.63e-01 76.9% 98.8%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 30.0 4.43e-01 87.4% 93.9%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 32.0 4.67e-01 86.3% 100.0%
3im9A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.66 28.0 4.34e-01 87.4% 98.6%
3d68A01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.66 29.0 4.03e-01 85.2% 81.5%
1kwmA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.64 31.0 4.38e-01 72.0% 96.6%
2vfrA03 3.30.70.2530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 27.0 3.76e-01 90.7% 81.6%
2xs2A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 32.0 4.32e-01 82.4% 98.9%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 32.0 4.42e-01 85.7% 100.0%
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.62 54.0 5.52e-01 96.7% 94.9%
1h2vZ00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 33.0 4.35e-01 89.6% 97.8%
3tqeA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.62 28.0 4.03e-01 87.9% 100.0%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 34.0 4.41e-01 78.0% 97.9%
3nwgA02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.61 33.0 4.22e-01 70.9% 91.1%
2cfxA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.61 31.0 4.19e-01 72.5% 95.6%
2ywwA01 3.30.70.140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain 0.61 30.0 4.09e-01 81.9% 92.3%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 32.0 4.27e-01 86.8% 95.8%
1r9wA00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.59 39.0 4.40e-01 89.0% 85.5%
1wi8A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 28.0 3.96e-01 83.5% 100.0%
2a10D00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.58 33.0 4.33e-01 97.3% 100.0%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 26.0 3.81e-01 86.8% 98.6%
2dnmA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 31.0 3.95e-01 73.1% 90.3%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 39.0 4.32e-01 89.0% 86.2%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 33.0 4.14e-01 81.3% 99.1%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.53 40.0 3.97e-01 78.6% 88.1%
3wy7D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 31.0 3.67e-01 81.3% 90.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587269 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.73 69.0 6.75e-01 100.0% 99.0%
4946289 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.73 34.0 4.82e-01 85.7% 91.1%
1318644 304.4.1.20 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.72 33.0 4.86e-01 87.4% 96.3%
5022986 304.113.1.0 ↗ a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain 0.72 33.0 4.91e-01 80.8% 100.0%
5021042 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 34.0 4.81e-01 85.2% 96.5%
4031372 862.1.1.12 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PF29905 0.71 66.0 6.44e-01 100.0% 93.5%
5056577 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.68 30.0 4.51e-01 85.2% 98.7%
4935067 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.68 34.0 4.75e-01 80.2% 100.0%
4976949 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.68 33.0 4.73e-01 80.8% 100.0%
5079732 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.68 34.0 4.66e-01 85.7% 95.6%
4952784 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.68 35.0 4.81e-01 82.4% 100.0%
5009365 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 31.0 4.63e-01 84.1% 100.0%
4524153 304.22.1.1 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.67 32.0 4.49e-01 70.9% 94.1%
5061711 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.67 34.0 4.78e-01 90.7% 100.0%
5074162 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.66 35.0 4.73e-01 82.4% 97.9%
4934181 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 31.0 4.51e-01 83.0% 100.0%
3280691 304.13.1.0 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein VC0424 › Hypothetical protein VC0424 0.65 39.0 4.93e-01 85.7% 98.2%
3644835 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.64 30.0 4.40e-01 85.7% 100.0%
4931230 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.62 31.0 4.29e-01 87.9% 95.6%
3108806 304.54.1.1 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC 0.62 32.0 4.37e-01 88.5% 98.9%
3598810 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.61 47.0 4.79e-01 79.7% 86.1%
4141737 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.61 29.0 4.12e-01 88.5% 98.8%
3978701 304.54.1.1 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC 0.61 32.0 4.32e-01 75.8% 100.0%
2391188 304.54.1.1 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC 0.60 34.0 4.39e-01 71.4% 99.0%
2791434 304.55.1.10 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD 0.60 40.0 4.35e-01 89.6% 80.3%
5047334 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.60 33.0 4.32e-01 74.2% 100.0%
5112 304.55.1.10 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD 0.59 39.0 4.40e-01 89.0% 85.5%
4027187 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.59 33.0 4.40e-01 100.0% 100.0%
4946216 304.4.1.83 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HTH_24 0.59 38.0 4.58e-01 100.0% 95.2%
3471441 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.57 32.0 3.96e-01 80.8% 87.0%
4030243 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 33.0 4.18e-01 96.7% 98.1%
3695902 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.56 32.0 3.17e-01 90.1% 51.3%
4133554 304.24.1.21 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.53 31.0 3.06e-01 90.1% 52.6%
5052911 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 39.0 2.91e-01 82.4% 49.1%