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NC_041832.1__YP_009590751.1__FDG52_s3gp17__00017

Bact-Vir

NC_041832.1__YP_009590751.1__FDG52_s3gp17__00017

Identity

Accession:
NC_041832 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-66
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 4.90e-01 79.7% 68.2%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 4.60e-01 89.8% 51.9%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.66 51.0 4.12e-01 91.5% 42.1%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 42.0 4.14e-01 74.6% 61.5%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 4.03e-01 79.7% 48.0%
1x1aA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 3.41e-01 94.9% 28.2%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 3.74e-01 89.8% 40.4%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.34e-01 89.8% 74.4%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 3.69e-01 88.1% 41.9%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.18e-01 88.1% 70.6%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.16e-01 89.8% 67.8%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 3.64e-01 89.8% 41.1%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.13e-01 89.8% 69.3%
8ajqA01 3.90.1590.10 Alpha Beta › Alpha-Beta Complex › glutathione-dependent formaldehyde- activating enzyme (gfa) › glutathione-dependent formaldehyde- activating enzyme (gfa) 0.58 47.0 3.81e-01 100.0% 46.1%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.34e-01 94.9% 71.9%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.70e-01 88.1% 51.6%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.04e-01 89.8% 74.4%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.83e-01 89.8% 64.3%
6f7bA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 45.0 2.93e-01 100.0% 72.6%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 39.0 3.67e-01 88.1% 76.5%
2vlaA03 1.10.10.2090 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 37.0 3.03e-01 91.5% 38.3%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.51 42.0 2.98e-01 100.0% 36.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587522 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 60.0 5.66e-01 91.5% 75.7%
4094061 101.1.9.98 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.65 52.0 4.69e-01 91.5% 68.2%
3279636 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.64 51.0 4.50e-01 89.8% 67.8%
3970719 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.67e-01 89.8% 76.2%
4009413 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 51.0 4.47e-01 89.8% 67.8%
1316879 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 50.0 5.00e-01 91.5% 90.2%
3981080 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 50.0 4.49e-01 89.8% 71.8%
4331694 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 4.52e-01 81.4% 76.7%
4032183 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 50.0 4.58e-01 89.8% 76.2%
3966238 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 50.0 4.48e-01 89.8% 71.8%
None 0.62 49.0 4.53e-01 89.8% 76.2%
3180809 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 51.0 5.13e-01 100.0% 91.7%
3989440 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 50.0 4.37e-01 89.8% 67.8%
3969385 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.52e-01 89.8% 76.2%
3973326 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 4.32e-01 89.8% 67.8%
4031672 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 4.49e-01 89.8% 76.2%
3947249 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 4.49e-01 89.8% 76.2%
3948722 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 4.25e-01 89.8% 64.2%
4185875 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 48.0 4.38e-01 89.8% 71.8%
4588125 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 4.44e-01 88.1% 75.0%
3946899 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 4.24e-01 89.8% 64.2%
3971943 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 4.49e-01 89.8% 76.2%
3981659 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 4.31e-01 89.8% 67.8%
4605333 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 4.38e-01 89.8% 71.8%
3284225 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 48.0 4.42e-01 89.8% 76.2%
4570068 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 48.0 4.25e-01 89.8% 67.8%
3968396 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 48.0 4.27e-01 89.8% 71.1%
3946350 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 51.0 4.49e-01 94.9% 71.1%
4004508 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 4.44e-01 89.8% 76.2%
4370821 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 49.0 4.35e-01 89.8% 71.8%
4009354 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 48.0 4.26e-01 89.8% 67.8%
3942606 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 47.0 4.27e-01 89.8% 71.8%
3967891 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 47.0 4.22e-01 88.1% 70.6%
3943494 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 47.0 4.27e-01 89.8% 71.8%
4117030 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 50.0 4.38e-01 94.9% 71.1%
4135755 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 48.0 4.20e-01 89.8% 67.8%
3946422 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 47.0 4.25e-01 89.8% 71.8%
3966780 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.16e-01 89.8% 67.8%
4371313 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 47.0 4.07e-01 89.8% 63.2%
4032354 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 46.0 4.12e-01 89.8% 67.8%
3971950 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.30e-01 94.9% 71.1%
3945690 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 49.0 4.30e-01 94.9% 71.1%
3966995 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.58 46.0 4.10e-01 89.8% 67.8%
3942639 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.58 49.0 4.29e-01 94.9% 71.1%
3968471 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.58 46.0 4.05e-01 89.8% 67.8%
3986748 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 45.0 4.03e-01 89.8% 67.8%
2831957 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 47.0 4.19e-01 94.9% 71.9%
4008585 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 47.0 4.17e-01 94.9% 71.1%
3946198 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 47.0 4.25e-01 94.9% 75.3%
4991791 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.93e-01 91.5% 65.3%
3941446 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 46.0 4.19e-01 94.9% 75.3%
4137092 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.56 46.0 4.23e-01 94.9% 80.0%
4940495 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.55 46.0 2.96e-01 100.0% 22.8%
3390907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 3.31e-01 84.7% 50.0%
4141722 605.1.1.289 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF26892 0.52 38.0 3.24e-01 88.1% 46.0%
D2 high residues 75-153
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tdxG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.66 48.0 3.51e-01 77.2% 64.5%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 44.0 3.77e-01 100.0% 47.7%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.15e-01 81.0% 78.6%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.55 37.0 3.91e-01 98.7% 78.9%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.10e-01 86.1% 82.0%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.53 39.0 3.34e-01 79.7% 93.4%
5fl7G02 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.52 37.0 2.80e-01 74.7% 69.3%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 4.03e-01 100.0% 80.2%
2petA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.35e-01 100.0% 54.3%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4969221 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.67 52.0 3.53e-01 86.1% 23.9%
3588288 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.62 45.0 3.69e-01 78.5% 55.3%
4033072 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.61 43.0 4.25e-01 74.7% 96.5%
5049926 810.1.1.2 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.58 40.0 3.59e-01 72.2% 97.3%
3450430 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 35.0 2.74e-01 73.4% 25.7%
3821254 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.56 40.0 3.49e-01 75.9% 56.0%
4994432 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.87e-01 86.1% 61.9%
5066984 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.55 41.0 4.09e-01 100.0% 77.5%
5065308 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.55 44.0 3.94e-01 89.9% 64.2%
4614439 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.55 40.0 4.01e-01 98.7% 75.0%
3608304 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 4.34e-01 100.0% 85.5%
3935690 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.54 45.0 3.94e-01 96.2% 75.4%
4059788 387.1.1.24 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Toxin_35 0.54 38.0 4.09e-01 78.5% 90.8%
4890002 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 37.0 2.93e-01 72.2% 45.6%
3223233 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.53 41.0 3.00e-01 84.8% 64.8%
3488429 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.53 41.0 3.18e-01 84.8% 79.5%
3550392 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.16e-01 84.8% 78.9%
4002047 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 40.0 2.65e-01 86.1% 31.2%
4951172 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 41.0 3.73e-01 84.8% 62.9%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 4.01e-01 100.0% 65.6%
3517620 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 37.0 2.56e-01 77.2% 37.5%
4945933 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.52 37.0 3.28e-01 74.7% 49.2%
3485716 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 40.0 3.06e-01 84.8% 77.9%
None 0.51 40.0 3.08e-01 84.8% 78.9%
3246937 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 32.0 3.33e-01 70.9% 68.6%
3394822 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 39.0 3.00e-01 84.8% 74.9%
3218266 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.51 38.0 2.51e-01 79.7% 34.1%
3479321 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.50 41.0 2.73e-01 94.9% 92.5%
3743393 59.1.4.2 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.50 35.0 2.25e-01 72.2% 35.4%
3391149 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.50 41.0 2.82e-01 98.7% 68.7%