←Back to structures
NC_041833.1__YP_009590808.1__FDG52_s4gp52__00052
Bact-VirNC_041833.1__YP_009590808.1__FDG52_s4gp52__00052
Identity
- Accession:
- NC_041833 ↗
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Connertonviridae›
Firehammervirus›
Campylobacter_phage_vB_CcoM-IBB_35
TaxID: 2920889
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-117
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m3aA00 | 1.10.10.1900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like | 0.66 | 42.0 | 4.84e-01 | 80.4% | 92.5% |
| 1m4rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 48.0 | 4.26e-01 | 88.7% | 97.9% |
| 6az6A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 3.96e-01 | 78.4% | 97.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3933926 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 41.0 | 4.90e-01 | 84.5% | 92.3% |
| 3354221 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 37.0 | 4.30e-01 | 77.3% | 80.0% |
| 4642886 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 35.0 | 4.08e-01 | 85.6% | 100.0% |
| 4356531 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.53 | 39.0 | 3.40e-01 | 79.4% | 100.0% |
D2
high
residues 323-418
Domain cluster:
rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10544.16 best | T5orf172 | 46.6 | 5.70e-12 | 94.8% | 95.9% |
| PF13455.13 | MUG113 | 45.2 | 1.60e-11 | 80.2% | 97.3% |
D3
medium
residues 122-197
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6scxC01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.58 | 50.0 | 3.96e-01 | 100.0% | 95.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8219 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.60 | 31.0 | 3.80e-01 | 76.3% | 80.9% |
| 3879611 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.58 | 49.0 | 3.98e-01 | 98.7% | 99.4% |
| 3781281 | 377.9.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-Mss51 | 0.55 | 35.0 | 3.53e-01 | 97.4% | 65.3% |
D4
medium
residues 202-299
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00352__D1-74
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n00A01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.53 | 33.0 | 3.57e-01 | 79.6% | 73.8% |