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NC_041845.1__YP_009591111.1__FDG55_gp25__00025
Bact-VirNC_041845.1__YP_009591111.1__FDG55_gp25__00025
Identity
- Accession:
- NC_041845 ↗
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Taxonomy
TaxID: 1033977
Cluster
View cluster (18 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-124
Domain cluster:
rep: OR234010.1__WNV46927.1__LPLmcIH19_0010__00010__D13-114
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.74 | 45.0 | 4.52e-01 | 87.6% | 60.4% |
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.73 | 54.0 | 5.51e-01 | 90.7% | 79.6% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.70 | 51.0 | 4.97e-01 | 100.0% | 68.8% |
| 4ic6C01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 53.0 | 5.09e-01 | 100.0% | 70.9% |
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.70 | 37.0 | 4.75e-01 | 70.1% | 89.5% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.69 | 54.0 | 5.31e-01 | 94.8% | 77.1% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.69 | 53.0 | 4.95e-01 | 100.0% | 66.7% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.69 | 39.0 | 4.08e-01 | 80.4% | 59.3% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.69 | 55.0 | 4.50e-01 | 96.9% | 47.4% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 30.0 | 3.48e-01 | 90.7% | 54.8% |
| 6hhuA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 39.0 | 4.36e-01 | 86.6% | 71.8% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.67 | 57.0 | 4.60e-01 | 96.9% | 50.0% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 42.0 | 4.23e-01 | 89.7% | 62.9% |
| 4l68A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 43.0 | 4.12e-01 | 89.7% | 60.0% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.64 | 41.0 | 4.43e-01 | 90.7% | 78.5% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.64 | 38.0 | 4.05e-01 | 96.9% | 66.3% |
| 1ep3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 44.0 | 4.38e-01 | 100.0% | 71.7% |
| 3rgfA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 42.0 | 4.24e-01 | 86.6% | 69.8% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 33.0 | 3.76e-01 | 93.8% | 68.1% |
| 4myjA05 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 41.0 | 4.33e-01 | 87.6% | 78.4% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 29.0 | 3.40e-01 | 86.6% | 65.2% |
| 1dr9A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 39.0 | 3.96e-01 | 89.7% | 68.4% |
| 4lx3A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.58 | 35.0 | 3.54e-01 | 92.8% | 59.4% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 52.0 | 4.28e-01 | 100.0% | 72.1% |
| 2x8kA01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 48.0 | 4.71e-01 | 100.0% | 84.8% |
| 1d06A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 40.0 | 3.64e-01 | 79.4% | 82.3% |
| 3ko2A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 43.0 | 3.65e-01 | 95.9% | 53.4% |
| 1wxrA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 47.0 | 3.47e-01 | 100.0% | 40.5% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.52 | 37.0 | 3.60e-01 | 91.8% | 64.3% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 30.0 | 3.45e-01 | 100.0% | 80.9% |
| 1s67L00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 38.0 | 3.64e-01 | 79.4% | 89.1% |
| 8a8gA01 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.52 | 44.0 | 3.93e-01 | 94.8% | 91.4% |
| 5i4nA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 37.0 | 3.84e-01 | 90.7% | 81.5% |
| 5w17A01 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.51 | 36.0 | 3.14e-01 | 72.2% | 78.7% |
| 5z0uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.63e-01 | 97.9% | 63.7% |
| 5dm6S01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.51 | 41.0 | 4.30e-01 | 99.0% | 100.0% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4608778 | 1.1.7.107 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 | 0.77 | 57.0 | 5.26e-01 | 92.8% | 61.7% |
| 5037173 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.77 | 49.0 | 5.01e-01 | 91.8% | 66.3% |
| 3720023 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 53.0 | 5.32e-01 | 99.0% | 75.0% |
| 3748285 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.71 | 52.0 | 4.16e-01 | 100.0% | 40.6% |
| 4379249 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.70 | 57.0 | 5.21e-01 | 100.0% | 67.2% |
| 4172288 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.70 | 50.0 | 5.20e-01 | 92.8% | 80.0% |
| 3289340 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 47.0 | 5.11e-01 | 90.7% | 83.7% |
| 3243970 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 51.0 | 5.08e-01 | 97.9% | 75.0% |
| 3588729 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 61.0 | 6.19e-01 | 99.0% | 97.9% |
| 4033714 | 1.1.13.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail | 0.67 | 56.0 | 5.72e-01 | 97.9% | 91.6% |
| 4519111 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.67 | 45.0 | 4.67e-01 | 93.8% | 74.4% |
| 4995815 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 57.0 | 5.22e-01 | 100.0% | 72.8% |
| 184486 | 1.1.13.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st | 0.65 | 47.0 | 5.09e-01 | 100.0% | 91.4% |
| 3917372 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.65 | 33.0 | 3.71e-01 | 88.7% | 62.7% |
| 3502668 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 29.0 | 3.41e-01 | 89.7% | 60.0% |
| 3299946 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.63 | 50.0 | 4.72e-01 | 94.8% | 71.3% |
| 3226615 | 4.1.1.389 ↗ | beta barrels › SH3 › SH3 › SH3 › PF30352 | 0.63 | 34.0 | 3.44e-01 | 90.7% | 51.6% |
| 3977382 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.63 | 53.0 | 5.41e-01 | 99.0% | 94.7% |
| 4629425 | 11.1.1.1369 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1410 | 0.62 | 43.0 | 4.37e-01 | 90.7% | 72.6% |
| 4527829 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 42.0 | 4.24e-01 | 89.7% | 70.5% |
| 3598670 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.61 | 39.0 | 3.11e-01 | 92.8% | 31.5% |
| 3557844 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.61 | 44.0 | 4.19e-01 | 76.3% | 96.5% |
| 4809346 | 1.1.13.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 | 0.59 | 48.0 | 5.05e-01 | 90.7% | 98.8% |
| 3969448 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.59 | 52.0 | 5.06e-01 | 97.9% | 100.0% |
| 4949079 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.58 | 41.0 | 4.47e-01 | 78.4% | 88.7% |
| 3570368 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 32.0 | 3.26e-01 | 91.8% | 52.0% |
| 3250648 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.58 | 41.0 | 4.08e-01 | 90.7% | 71.0% |
| 3250857 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 38.0 | 3.96e-01 | 88.7% | 73.3% |
| 3270183 | 11.1.1.843 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 | 0.57 | 44.0 | 3.90e-01 | 89.7% | 57.8% |
| 3264091 | 11.1.1.1038 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SIBA-E_N, Ig_SIBA-E_2nd | 0.57 | 43.0 | 3.36e-01 | 90.7% | 35.1% |
| 4980697 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 43.0 | 4.13e-01 | 79.4% | 93.6% |
| 3941539 | 1.1.13.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail | 0.57 | 50.0 | 4.89e-01 | 99.0% | 99.0% |
| 4986762 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.57 | 42.0 | 3.25e-01 | 78.4% | 46.0% |
| 5045304 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 41.0 | 3.92e-01 | 79.4% | 86.1% |
| 3991229 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.55 | 35.0 | 2.98e-01 | 81.4% | 38.2% |
| 5046055 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.55 | 41.0 | 3.83e-01 | 79.4% | 90.0% |
| 4177961 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.54 | 40.0 | 3.75e-01 | 79.4% | 81.6% |
| 3656588 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 42.0 | 3.33e-01 | 89.7% | 38.5% |
| 5018331 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.54 | 40.0 | 2.99e-01 | 79.4% | 38.1% |
| 4996177 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 41.0 | 3.76e-01 | 81.4% | 81.6% |
| 5048057 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.53 | 40.0 | 3.80e-01 | 81.4% | 88.3% |
| 4983714 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.53 | 40.0 | 3.91e-01 | 79.4% | 92.4% |
| 4366032 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.53 | 39.0 | 2.69e-01 | 77.3% | 33.3% |
| 4361348 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 39.0 | 3.48e-01 | 79.4% | 75.7% |
| 3216034 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 41.0 | 3.58e-01 | 90.7% | 55.3% |
| 3277941 | 223.1.1.36 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD | 0.51 | 38.0 | 3.27e-01 | 79.4% | 90.6% |
| 5048405 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.51 | 39.0 | 3.67e-01 | 81.4% | 86.7% |
| 4977582 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 38.0 | 3.58e-01 | 79.4% | 88.3% |
| 3801941 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.51 | 40.0 | 3.78e-01 | 83.5% | 74.8% |
| 4966045 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.51 | 40.0 | 3.00e-01 | 88.7% | 56.7% |
| 3072568 | 4052.1.1.1 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA_dh_M | 0.50 | 43.0 | 4.03e-01 | 97.9% | 93.7% |
| 4285300 | 239.1.1.3 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p | 0.50 | 42.0 | 4.31e-01 | 94.8% | 100.0% |
| 5017897 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.50 | 38.0 | 3.36e-01 | 82.5% | 66.7% |