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NC_041845.1__YP_009591136.1__FDG55_gp50__00050

Bact-Vir

NC_041845.1__YP_009591136.1__FDG55_gp50__00050

Identity

Accession:
NC_041845 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 66.0 6.09e-01 100.0% 64.4%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 63.0 5.48e-01 100.0% 55.1%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 65.0 5.37e-01 100.0% 51.4%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 63.0 5.73e-01 100.0% 66.7%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 58.0 4.79e-01 100.0% 45.7%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 63.0 5.26e-01 100.0% 51.9%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 65.0 5.49e-01 100.0% 57.3%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 58.0 5.17e-01 100.0% 57.5%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 58.0 5.04e-01 100.0% 54.3%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 4.56e-01 100.0% 37.1%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 5.59e-01 100.0% 73.9%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 61.0 5.08e-01 100.0% 53.4%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 5.37e-01 100.0% 64.0%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.45e-01 100.0% 65.6%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 4.77e-01 100.0% 49.6%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 61.0 5.30e-01 100.0% 65.9%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 5.08e-01 100.0% 62.6%
1xb4B01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.66 58.0 4.78e-01 100.0% 55.8%
2mbfA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 4.84e-01 100.0% 61.9%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.62 42.0 3.25e-01 71.7% 77.9%
3k2dA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 38.0 2.96e-01 100.0% 29.0%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 51.0 4.11e-01 100.0% 50.0%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 42.0 3.26e-01 80.0% 90.8%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.58 40.0 2.99e-01 71.7% 98.1%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 37.0 3.34e-01 85.0% 47.1%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 36.0 3.29e-01 85.0% 46.6%
3g88A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 35.0 2.43e-01 98.3% 16.3%
3igrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 44.0 3.24e-01 93.3% 76.5%
2qmwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 48.0 4.12e-01 100.0% 100.0%
5cvdB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 40.0 2.81e-01 86.7% 59.7%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.44e-01 100.0% 60.3%
1if1B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.75e-01 100.0% 73.1%
3rosA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.52 43.0 3.02e-01 91.7% 50.5%
3hp7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.04e-01 98.3% 42.9%
2ac2A01 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 3.11e-01 93.3% 95.8%
3shpA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.10e-01 96.7% 77.8%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 36.0 3.32e-01 100.0% 55.1%
4u9rA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 43.0 3.92e-01 100.0% 76.8%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036586 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.89 74.0 6.46e-01 100.0% 62.4%
3972430 101.1.2.213 alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.86 75.0 6.96e-01 100.0% 76.0%
3958566 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.84 65.0 5.63e-01 100.0% 55.6%
4251909 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.84 66.0 5.84e-01 100.0% 60.0%
3941591 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 67.0 5.96e-01 100.0% 62.4%
4977905 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 60.0 5.72e-01 98.3% 65.7%
4928394 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 64.0 6.22e-01 100.0% 75.8%
5074554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 74.0 5.09e-01 100.0% 30.8%
5028427 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.82 63.0 5.20e-01 100.0% 47.6%
3935353 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 62.0 5.56e-01 100.0% 59.0%
4556736 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.81 65.0 6.19e-01 100.0% 74.3%
4999546 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.81 69.0 5.88e-01 100.0% 58.9%
5047500 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.81 68.0 4.58e-01 100.0% 26.2%
4994794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 68.0 6.26e-01 100.0% 73.3%
5035522 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.80 67.0 5.47e-01 100.0% 51.4%
5045983 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.80 72.0 6.04e-01 100.0% 60.0%
4997123 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.79 66.0 4.54e-01 100.0% 27.5%
4934055 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.79 67.0 6.05e-01 100.0% 68.8%
5031662 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.79 65.0 5.07e-01 100.0% 43.2%
5082110 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 6.09e-01 98.3% 83.3%
5000571 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.78 64.0 5.76e-01 100.0% 66.3%
4941955 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 71.0 6.14e-01 100.0% 67.8%
4941699 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 5.57e-01 100.0% 66.7%
4978533 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.78 69.0 5.27e-01 100.0% 43.7%
3961937 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 63.0 6.54e-01 100.0% 94.5%
4478972 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.78 65.0 5.27e-01 100.0% 50.0%
4944051 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 63.0 4.56e-01 100.0% 31.8%
3250041 101.1.2.525 alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.77 69.0 4.57e-01 100.0% 26.2%
4971686 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 64.0 5.28e-01 100.0% 52.4%
4976186 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 67.0 4.87e-01 100.0% 37.4%
4978855 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 64.0 5.10e-01 100.0% 46.7%
2685 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 58.0 5.10e-01 100.0% 56.2%
4934296 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 65.0 5.37e-01 100.0% 54.3%
4990676 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.75 68.0 5.50e-01 100.0% 55.5%
5000735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 61.0 4.33e-01 100.0% 30.9%
3286277 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 66.0 4.67e-01 100.0% 33.3%
3269500 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.28e-01 100.0% 56.6%
5050129 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.74 66.0 5.39e-01 100.0% 55.5%
3286725 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 65.0 4.56e-01 100.0% 31.9%
3586609 101.1.2.278 alpha arrays › HTH › HTH › winged helix domain › CNDH2_C 0.73 60.0 4.78e-01 100.0% 45.4%
5023957 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.73 57.0 5.19e-01 100.0% 63.7%
3355197 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 59.0 5.01e-01 100.0% 54.0%
3285723 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 64.0 4.52e-01 100.0% 33.7%
5075771 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 61.0 5.03e-01 100.0% 51.8%
3279209 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 63.0 4.50e-01 100.0% 33.7%
3278037 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 63.0 4.34e-01 100.0% 30.3%
4943782 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 4.74e-01 100.0% 46.7%
3281879 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 62.0 4.39e-01 100.0% 32.8%
3963083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 63.0 4.77e-01 100.0% 43.7%
5045098 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.68 61.0 5.34e-01 100.0% 66.7%
5003349 101.1.2.921 alpha arrays › HTH › HTH › winged helix domain › DUF7109 0.68 61.0 5.13e-01 100.0% 61.0%
3316881 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 60.0 4.32e-01 100.0% 35.9%
5058376 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 57.0 4.92e-01 100.0% 60.0%
3187043 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 4.75e-01 100.0% 60.0%
5014345 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.66 57.0 5.05e-01 100.0% 65.6%
5076338 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 58.0 4.08e-01 100.0% 35.1%
3519458 101.1.2.12 alpha arrays › HTH › HTH › winged helix domain › DEP 0.64 54.0 4.97e-01 100.0% 71.2%
3168799 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.64 56.0 4.07e-01 100.0% 44.2%
3214664 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 4.56e-01 100.0% 64.5%
3437845 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 4.72e-01 100.0% 65.3%
3781035 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 54.0 4.67e-01 100.0% 68.1%
3637726 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 4.30e-01 100.0% 52.7%
5066201 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.61 54.0 4.59e-01 100.0% 60.0%
3710667 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 3.27e-01 100.0% 21.9%
3505148 101.1.2.147 alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.59 52.0 4.17e-01 100.0% 59.2%
3489258 306.8.1.0 a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like 0.58 48.0 4.17e-01 100.0% 93.3%
3781705 101.1.2.527 alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 0.58 50.0 4.09e-01 100.0% 53.9%
4948099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 51.0 4.17e-01 100.0% 64.5%
5004772 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 4.26e-01 100.0% 70.0%
4372405 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.55 47.0 3.08e-01 100.0% 23.8%
3970545 310.3.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM 0.54 38.0 3.53e-01 100.0% 58.2%
3800972 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 38.0 4.04e-01 91.7% 94.0%
4947605 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.52 38.0 3.53e-01 100.0% 60.0%
3980386 7523.1.1.17 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC 0.52 41.0 3.15e-01 100.0% 33.3%
3970853 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 41.0 3.12e-01 100.0% 33.1%
4933494 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.51 36.0 3.16e-01 75.0% 91.6%
3946715 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 36.0 3.26e-01 100.0% 50.5%
3590710 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.50 36.0 3.27e-01 100.0% 51.6%
4931005 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 35.0 3.58e-01 100.0% 81.8%