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NC_041845.1__YP_009591152.1__FDG55_gp66__00066

Bact-Vir

NC_041845.1__YP_009591152.1__FDG55_gp66__00066

Identity

Accession:
NC_041845 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ficleduovirus› Flavobacterium_phage_FCV-1

TaxID: 1033977

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-68
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 75.0 7.20e-01 100.0% 79.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 75.0 6.46e-01 100.0% 60.9%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 75.0 7.56e-01 100.0% 91.4%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 74.0 7.28e-01 100.0% 84.1%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 71.0 7.15e-01 98.3% 86.2%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 73.0 7.04e-01 100.0% 79.1%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 72.0 6.66e-01 100.0% 70.7%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 72.0 6.79e-01 100.0% 77.1%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 71.0 7.35e-01 100.0% 96.4%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.84 69.0 4.68e-01 100.0% 25.7%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 70.0 6.53e-01 100.0% 75.0%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.74 55.0 5.92e-01 96.6% 94.0%
3jtgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 5.16e-01 94.9% 100.0%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 43.0 4.49e-01 74.6% 69.1%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 42.0 4.29e-01 74.6% 65.5%
3dfgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.94e-01 89.8% 91.7%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.65 37.0 4.08e-01 94.9% 70.2%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 4.80e-01 79.7% 89.1%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.62 47.0 4.11e-01 84.7% 60.6%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 46.0 4.32e-01 98.3% 64.9%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 44.0 4.09e-01 100.0% 63.3%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.57 40.0 4.05e-01 78.0% 74.1%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 46.0 3.72e-01 98.3% 80.8%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.56 41.0 3.85e-01 79.7% 75.7%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.56 40.0 3.84e-01 94.9% 65.3%
1tuoA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.56 48.0 3.92e-01 100.0% 84.6%
2ygwA01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.56 46.0 3.46e-01 93.2% 57.5%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 45.0 2.94e-01 89.8% 27.2%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 39.0 3.60e-01 76.3% 92.3%
1g41A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 3.20e-01 98.3% 66.3%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 44.0 3.59e-01 96.6% 82.6%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 44.0 3.84e-01 96.6% 63.5%
4bjmC00 1.20.58.1680 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 39.0 2.70e-01 79.7% 39.5%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.52 39.0 3.37e-01 81.4% 64.6%
3aleA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 34.0 2.66e-01 94.9% 28.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944331 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.93 79.0 7.00e-01 100.0% 66.3%
4404485 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.91 77.0 7.66e-01 100.0% 88.3%
2753461 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.91 76.0 6.91e-01 100.0% 69.7%
4606780 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 72.0 7.18e-01 100.0% 88.3%
3289034 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.86 71.0 7.02e-01 100.0% 84.1%
3974013 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 65.0 6.56e-01 98.3% 86.7%
3590835 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.77 55.0 5.99e-01 79.7% 100.0%
3957316 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.76 58.0 5.67e-01 88.1% 75.4%
3938462 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 51.0 4.63e-01 94.9% 53.8%
3590733 101.1.2.489 ↗ alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.74 55.0 5.85e-01 94.9% 96.0%
4938071 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 48.0 5.38e-01 89.8% 91.1%
5051842 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.71 54.0 4.70e-01 93.2% 53.3%
5074546 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 4.98e-01 94.9% 60.0%
3180545 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.71 37.0 4.82e-01 72.9% 100.0%
3295625 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.70 63.0 5.17e-01 100.0% 56.2%
3960463 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.69 44.0 4.43e-01 72.9% 63.3%
4053440 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.67 48.0 4.47e-01 89.8% 60.0%
3385513 148.1.3.238 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 0.67 41.0 4.42e-01 84.7% 72.0%
3617137 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 49.0 5.08e-01 79.7% 85.5%
3285377 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.64 47.0 3.02e-01 78.0% 42.2%
4471800 148.1.3.237 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30483 0.63 37.0 3.45e-01 84.7% 46.7%
5082736 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.61e-01 100.0% 73.4%
3315337 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.62 43.0 2.90e-01 72.9% 44.3%
3251368 3919.1.1.3 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMMD8_HN 0.61 52.0 4.23e-01 100.0% 68.3%
4228013 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.61 48.0 3.77e-01 89.8% 67.4%
3550609 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.59 51.0 4.15e-01 100.0% 78.3%
3743739 2485.1.1.49 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_12 0.56 47.0 3.46e-01 98.3% 92.0%
3519106 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 44.0 3.24e-01 88.1% 35.2%
3854649 108.1.1.20 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.55 45.0 4.13e-01 93.2% 73.8%
3628284 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.55 44.0 3.71e-01 89.8% 55.0%
3239187 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.52 43.0 3.96e-01 93.2% 76.2%
4370713 131.1.1.4 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc 0.52 45.0 2.77e-01 98.3% 66.7%
3604896 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.52 43.0 3.98e-01 96.6% 71.2%
3398766 109.4.1.19 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vitellogenin_N 0.52 42.0 2.66e-01 88.1% 17.1%
3170733 109.4.1.3117 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30095 0.51 44.0 2.97e-01 96.6% 38.0%