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NC_041852.1__YP_009591830.1__FDG62_gp090__00090

Bact-Vir

NC_041852.1__YP_009591830.1__FDG62_gp090__00090

Identity

Accession:
NC_041852 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fromanvirus› Mycobacterium_phage_Nepal

TaxID: 2927981

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-75
PDB
Domain cluster: rep: MW584202.1__QSM04733.1__PROPHIGD54-2_155__00133__D6-62
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.63 47.0 3.80e-01 81.4% 98.3%
5tfmA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.63 43.0 3.58e-01 100.0% 42.9%
5eb9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 54.0 4.43e-01 100.0% 57.1%
5xctB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.35e-01 100.0% 55.4%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 51.0 4.34e-01 100.0% 99.0%
1nezH00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.12e-01 100.0% 58.3%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 50.0 3.64e-01 100.0% 41.0%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 50.0 3.59e-01 96.6% 40.0%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 4.18e-01 100.0% 57.1%
1q90C00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 48.0 3.88e-01 96.6% 88.1%
1m5q102 3.30.310.60 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Like-Sm ribonucleoprotein, C-terminal domain 0.58 42.0 4.26e-01 89.8% 81.0%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.81e-01 100.0% 51.5%
2gzbB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 45.0 3.39e-01 91.5% 82.2%
3csvA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 44.0 4.06e-01 89.8% 97.6%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 46.0 4.07e-01 98.3% 100.0%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.87e-01 89.8% 66.2%
3cj1A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.55 41.0 2.69e-01 81.4% 63.1%
4kzsA01 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.54 46.0 4.31e-01 98.3% 98.7%
1h0hB02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 32.0 3.16e-01 100.0% 54.7%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 37.0 3.95e-01 100.0% 93.9%
5nfiB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.29e-01 89.8% 98.5%
5gt8D02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 37.0 3.02e-01 100.0% 36.9%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.52 43.0 3.67e-01 100.0% 65.5%
5x9vA01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.52 40.0 2.79e-01 89.8% 83.3%
5hiwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 44.0 2.76e-01 100.0% 63.4%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.52 39.0 2.35e-01 84.7% 20.8%
2frxA02 3.10.450.720 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.00e-01 88.1% 38.4%
2l9dA00 3.30.70.2340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF12112 family, DUF3579 0.52 42.0 3.54e-01 100.0% 50.9%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.44e-01 100.0% 69.7%
4tl8F00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 3.00e-01 100.0% 82.6%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 37.0 3.69e-01 88.1% 77.4%
7agpA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.51 36.0 3.63e-01 89.8% 77.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 38.0 3.12e-01 89.8% 61.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4653756 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.65 55.0 4.46e-01 100.0% 99.2%
3246047 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.60 50.0 3.35e-01 100.0% 43.6%
4073618 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.59 47.0 4.03e-01 98.3% 92.2%
3831339 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.59 49.0 3.29e-01 100.0% 30.2%
3631376 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.58 47.0 3.70e-01 93.2% 91.9%
4927492 304.51.1.11 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_N 0.58 47.0 4.07e-01 91.5% 78.9%
4946951 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.56 45.0 3.14e-01 91.5% 94.3%
3419698 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.55 35.0 3.26e-01 100.0% 47.5%
4208861 2004.1.1.224 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_SecA 0.53 45.0 3.01e-01 94.9% 94.3%
3612662 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.53 45.0 3.52e-01 96.6% 98.5%
1877482 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.52 44.0 2.76e-01 100.0% 63.6%
3330143 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.52 42.0 2.92e-01 100.0% 30.0%
5025277 284.1.1.13 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP-like_N 0.51 35.0 3.58e-01 86.4% 78.2%