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NC_041854.1__YP_009591940.1__FDG64_gp17__00017
Bact-VirNC_041854.1__YP_009591940.1__FDG64_gp17__00017
Identity
- Accession:
- NC_041854 ↗
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Phimunavirus›
Pectobacterium_phage_PhiM1
TaxID: 1211386
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-90
Domain cluster:
rep: HG818824.1__CDM21610.1__X__00026__D34-88
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gkuA03 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.70 | 59.0 | 5.63e-01 | 100.0% | 88.7% |
| 1nthA00 | 3.20.20.460 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Monomethylamine methyltransferase MtmB | 0.69 | 57.0 | 3.38e-01 | 93.1% | 21.2% |
| 2cpmA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.67 | 58.0 | 5.00e-01 | 100.0% | 66.0% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.67 | 42.0 | 4.27e-01 | 72.4% | 65.5% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.64 | 48.0 | 4.07e-01 | 81.0% | 57.3% |
| 4yj6A00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.64 | 43.0 | 2.58e-01 | 72.4% | 9.4% |
| 2dsiA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.63 | 53.0 | 4.03e-01 | 100.0% | 68.2% |
| 6x6aA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.63 | 49.0 | 3.13e-01 | 84.5% | 44.5% |
| 7e5wA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 51.0 | 3.98e-01 | 91.4% | 50.8% |
| 1tfrA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.61 | 45.0 | 3.13e-01 | 81.0% | 85.0% |
| 4g6tA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.60 | 41.0 | 3.26e-01 | 72.4% | 49.2% |
| 4dzrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 50.0 | 3.75e-01 | 100.0% | 41.1% |
| 3t5vA00 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 49.0 | 3.19e-01 | 94.8% | 71.2% |
| 4lunU00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 47.0 | 3.02e-01 | 89.7% | 23.5% |
| 3htuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 50.0 | 4.66e-01 | 100.0% | 98.7% |
| 4izzB03 | 1.10.10.1670 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain | 0.59 | 40.0 | 3.28e-01 | 70.7% | 97.4% |
| 4qicC01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.59 | 41.0 | 3.25e-01 | 74.1% | 42.4% |
| 5ybwA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 47.0 | 4.05e-01 | 93.1% | 94.9% |
| 1xb4B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 51.0 | 4.71e-01 | 100.0% | 98.7% |
| 4irxA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 48.0 | 3.60e-01 | 96.6% | 54.7% |
| 1wi9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 47.0 | 4.76e-01 | 94.8% | 96.6% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 48.0 | 4.24e-01 | 100.0% | 91.4% |
| 4bgdA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 48.0 | 4.30e-01 | 100.0% | 96.7% |
| 3bilA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 46.0 | 3.62e-01 | 94.8% | 57.7% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 38.0 | 3.62e-01 | 70.7% | 88.7% |
| 2l02A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.75e-01 | 81.0% | 80.5% |
| 1vw4801 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.56 | 43.0 | 4.03e-01 | 94.8% | 67.1% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 3.58e-01 | 100.0% | 46.6% |
| 3vasA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 42.0 | 2.74e-01 | 84.5% | 84.4% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.00e-01 | 96.6% | 80.5% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 36.0 | 3.52e-01 | 79.3% | 61.9% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 4.30e-01 | 100.0% | 97.1% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 43.0 | 3.71e-01 | 100.0% | 54.5% |
| 2uvaG06 | 1.20.930.70 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.53 | 38.0 | 3.07e-01 | 77.6% | 86.6% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 4.07e-01 | 100.0% | 76.6% |
| 1egiA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.53 | 45.0 | 3.57e-01 | 100.0% | 90.7% |
| 1hciA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 46.0 | 3.61e-01 | 100.0% | 73.8% |
| 3e70C01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.52 | 42.0 | 3.54e-01 | 87.9% | 88.7% |
| 4nreA02 | 1.20.245.10 | Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 | 0.52 | 43.0 | 2.63e-01 | 94.8% | 69.3% |
| 2vycA04 | 3.90.100.10 | Alpha Beta › Alpha-Beta Complex › Ornithine Decarboxylase; Chain A, domain 4 › Orn/Lys/Arg decarboxylase, C-terminal domain | 0.52 | 41.0 | 3.27e-01 | 87.9% | 85.6% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 4.30e-01 | 100.0% | 93.8% |
| 3oeeY02 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.52 | 38.0 | 2.98e-01 | 81.0% | 73.5% |
| 4rflA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.52 | 45.0 | 3.13e-01 | 100.0% | 54.3% |
| 1kgqA01 | 1.10.166.10 | Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain | 0.51 | 42.0 | 4.01e-01 | 94.8% | 98.6% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.50 | 36.0 | 2.70e-01 | 77.6% | 82.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4977235 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.70 | 53.0 | 4.42e-01 | 86.2% | 75.5% |
| 3832037 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 59.0 | 3.82e-01 | 98.3% | 45.4% |
| 3780948 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.69 | 59.0 | 5.04e-01 | 100.0% | 62.0% |
| 3503079 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.66 | 53.0 | 5.06e-01 | 91.4% | 75.7% |
| 4467985 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.65 | 54.0 | 4.69e-01 | 100.0% | 85.0% |
| 4664847 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.62 | 50.0 | 3.82e-01 | 93.1% | 48.7% |
| 4443872 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 51.0 | 4.06e-01 | 100.0% | 48.9% |
| 3442602 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.60 | 42.0 | 3.63e-01 | 77.6% | 74.0% |
| 5031484 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.59 | 50.0 | 4.40e-01 | 96.6% | 72.2% |
| 4970769 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 42.0 | 3.59e-01 | 77.6% | 47.0% |
| 5078302 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 42.0 | 3.63e-01 | 79.3% | 49.0% |
| 4945647 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 43.0 | 3.67e-01 | 79.3% | 94.0% |
| 3370400 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 47.0 | 4.55e-01 | 100.0% | 82.9% |
| 3486085 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 49.0 | 3.88e-01 | 98.3% | 81.7% |
| 3679763 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.56 | 44.0 | 2.94e-01 | 87.9% | 41.7% |
| 3402276 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.56 | 47.0 | 3.59e-01 | 100.0% | 78.1% |
| 3544301 | 2004.1.1.635 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12, AAA_33 | 0.56 | 45.0 | 3.03e-01 | 100.0% | 21.4% |
| 3901614 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.55 | 47.0 | 4.23e-01 | 100.0% | 91.8% |
| 3943865 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 45.0 | 3.69e-01 | 98.3% | 60.8% |
| 4928905 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 42.0 | 3.08e-01 | 87.9% | 45.6% |
| 3226202 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.54 | 45.0 | 3.88e-01 | 100.0% | 73.0% |
| 4042716 | 2003.1.5.84 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DRE2_N | 0.53 | 44.0 | 3.57e-01 | 94.8% | 51.7% |
| 3243187 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 44.0 | 3.68e-01 | 94.8% | 79.0% |
| 3392697 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.52 | 45.0 | 3.51e-01 | 100.0% | 85.9% |
| 3289632 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.91e-01 | 100.0% | 81.5% |
| 3968506 | 3859.1.1.0 ↗ | alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain | 0.52 | 45.0 | 3.78e-01 | 100.0% | 83.8% |
| 3450793 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.52 | 42.0 | 3.34e-01 | 98.3% | 50.0% |
| 5016092 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.51 | 42.0 | 2.73e-01 | 100.0% | 82.8% |
| 3461917 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 41.0 | 3.50e-01 | 100.0% | 62.7% |
| 3315363 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 44.0 | 3.25e-01 | 100.0% | 91.9% |
| 4980158 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.51 | 39.0 | 2.76e-01 | 93.1% | 65.5% |
| 3959950 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.50 | 45.0 | 3.09e-01 | 100.0% | 59.0% |