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NC_041859.1__YP_009592332.1__FDG69_gp24__00024
Bact-VirNC_041859.1__YP_009592332.1__FDG69_gp24__00024
Identity
- Accession:
- NC_041859 ↗
- Kingdom:
- phage
Quality
89.8
mean pLDDT
Taxonomy
TaxID: 1814279
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-108
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.66 | 53.0 | 3.81e-01 | 86.6% | 100.0% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 42.0 | 3.93e-01 | 100.0% | 54.5% |
| 7r3eB02 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.63 | 54.0 | 4.43e-01 | 98.8% | 87.1% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 46.0 | 3.67e-01 | 76.8% | 97.0% |
| 5u1xA02 | 2.60.490.10 | Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain | 0.63 | 43.0 | 2.99e-01 | 70.7% | 90.9% |
| 2v0uA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 55.0 | 4.56e-01 | 97.6% | 97.3% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 43.0 | 3.98e-01 | 72.0% | 97.1% |
| 5l10B00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.61 | 53.0 | 4.25e-01 | 98.8% | 85.9% |
| 1qz8A01 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.60 | 50.0 | 4.60e-01 | 90.2% | 80.0% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.59 | 51.0 | 4.19e-01 | 100.0% | 90.9% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 42.0 | 4.15e-01 | 98.8% | 72.4% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.58 | 49.0 | 4.09e-01 | 100.0% | 53.8% |
| 7dluA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 38.0 | 3.91e-01 | 98.8% | 70.9% |
| 1o5wB02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.57 | 40.0 | 3.23e-01 | 74.4% | 70.1% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.57 | 44.0 | 3.95e-01 | 100.0% | 58.5% |
| 1s28A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 39.0 | 3.39e-01 | 72.0% | 79.2% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.55 | 46.0 | 3.79e-01 | 97.6% | 85.1% |
| 1wjwA01 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.55 | 39.0 | 3.88e-01 | 98.8% | 71.8% |
| 2ogkD00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.54 | 39.0 | 3.31e-01 | 76.8% | 100.0% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 47.0 | 3.95e-01 | 100.0% | 68.9% |
| 3mjgX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 35.0 | 3.33e-01 | 98.8% | 54.5% |
| 4g2uA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.53 | 37.0 | 2.85e-01 | 73.2% | 58.6% |
| 2dpnA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 47.0 | 3.38e-01 | 100.0% | 76.6% |
| 6ka3A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 46.0 | 3.86e-01 | 100.0% | 84.4% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 45.0 | 3.82e-01 | 95.1% | 85.4% |
| 4nohA01 | 3.30.70.3060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 30.0 | 3.20e-01 | 92.7% | 63.4% |
| 6lpnA04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 34.0 | 3.32e-01 | 98.8% | 57.9% |
| 3wx4A00 | 3.30.70.2770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.38e-01 | 97.6% | 59.2% |
| 1tyjA00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 2.86e-01 | 98.8% | 34.7% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 33.0 | 3.42e-01 | 89.0% | 69.6% |
| 2jbvA04 | 3.30.410.40 | Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › | 0.51 | 45.0 | 3.54e-01 | 100.0% | 48.9% |
| 1j20A02 | 3.90.1260.10 | Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 | 0.51 | 41.0 | 3.15e-01 | 93.9% | 78.4% |
| 6efyA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 33.0 | 3.18e-01 | 97.6% | 57.1% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 34.0 | 3.19e-01 | 72.0% | 100.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3445188 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.70 | 60.0 | 4.65e-01 | 93.9% | 60.6% |
| 4109482 | 223.1.1.182 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3369 | 0.67 | 60.0 | 4.69e-01 | 98.8% | 78.2% |
| 4998374 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 52.0 | 4.47e-01 | 87.8% | 78.4% |
| 3966635 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.63 | 54.0 | 4.36e-01 | 98.8% | 83.5% |
| 3487063 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.63 | 40.0 | 3.85e-01 | 93.9% | 54.6% |
| 4938399 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.63 | 47.0 | 4.22e-01 | 78.0% | 90.0% |
| 3968365 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.63 | 44.0 | 3.50e-01 | 73.2% | 51.5% |
| 4959464 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 52.0 | 4.54e-01 | 100.0% | 68.1% |
| 5002347 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 52.0 | 4.57e-01 | 100.0% | 72.8% |
| 4294933 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.60 | 51.0 | 4.13e-01 | 98.8% | 87.6% |
| 4931686 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 50.0 | 4.42e-01 | 100.0% | 70.8% |
| 4049204 | 223.1.1.5 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA | 0.58 | 52.0 | 4.22e-01 | 100.0% | 85.8% |
| 3570844 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 43.0 | 3.69e-01 | 81.7% | 88.9% |
| 4963927 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 38.0 | 3.33e-01 | 70.7% | 71.5% |
| 3476051 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 40.0 | 3.29e-01 | 76.8% | 73.1% |
| 3967012 | 2484.1.1.32 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C | 0.55 | 48.0 | 3.52e-01 | 100.0% | 79.6% |
| 4978633 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.54 | 45.0 | 3.85e-01 | 100.0% | 78.7% |
| 3706300 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.54 | 39.0 | 2.99e-01 | 79.3% | 34.0% |
| 5055694 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 39.0 | 3.53e-01 | 78.0% | 80.9% |
| 2989745 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.53 | 36.0 | 3.26e-01 | 98.8% | 49.6% |
| 1221632 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 35.0 | 3.33e-01 | 98.8% | 54.4% |
| 3772208 | 304.107.1.11 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › DEPDC5_CTD | 0.53 | 37.0 | 3.38e-01 | 95.1% | 52.2% |
| 3828316 | 220.1.1.205 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PHS1 | 0.53 | 40.0 | 3.33e-01 | 80.5% | 92.4% |
| 3657432 | 220.1.1.205 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PHS1 | 0.53 | 40.0 | 3.42e-01 | 80.5% | 99.2% |
| 3933162 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 40.0 | 3.77e-01 | 81.7% | 77.0% |
| 3876482 | 4956.1.1.1 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 | 0.52 | 40.0 | 4.04e-01 | 80.5% | 97.5% |
| 3788300 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.52 | 44.0 | 3.31e-01 | 95.1% | 54.8% |
| 3591533 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 44.0 | 3.60e-01 | 100.0% | 80.0% |
| 3232400 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 35.0 | 3.55e-01 | 81.7% | 70.6% |
| 5032651 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 42.0 | 3.53e-01 | 96.3% | 98.8% |
| 3494022 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.50 | 35.0 | 2.97e-01 | 98.8% | 42.1% |
| 3604508 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.50 | 38.0 | 3.76e-01 | 81.7% | 83.3% |
| 1680274 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.50 | 35.0 | 3.31e-01 | 93.9% | 59.6% |