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NC_041859.1__YP_009592347.1__FDG69_gp39__00039
Bact-VirNC_041859.1__YP_009592347.1__FDG69_gp39__00039
Identity
- Accession:
- NC_041859 ↗
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Taxonomy
TaxID: 1814279
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-94
Domain cluster:
rep: NC_062749.1__YP_010356992.1__M1M27_gp41__00041__D7-97
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3czhA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 42.0 | 2.75e-01 | 83.9% | 88.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3272504 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 28.0 | 2.72e-01 | 100.0% | 37.1% |
| 4625844 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.51 | 30.0 | 3.44e-01 | 77.4% | 78.6% |
| 3251331 | 11.1.5.109 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF28397 | 0.51 | 35.0 | 2.84e-01 | 72.0% | 74.1% |
| 1214409 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.50 | 29.0 | 3.19e-01 | 91.4% | 68.4% |
D2
high
residues 96-169
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.70 | 46.0 | 3.94e-01 | 87.8% | 43.1% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 51.0 | 5.70e-01 | 77.0% | 100.0% |
| 2gf2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.68 | 62.0 | 5.03e-01 | 100.0% | 81.3% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 47.0 | 4.76e-01 | 75.7% | 88.0% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.65 | 47.0 | 3.83e-01 | 77.0% | 47.6% |
| 2ix5A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.65 | 46.0 | 3.60e-01 | 74.3% | 53.5% |
| 1k78I00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 45.0 | 4.98e-01 | 79.7% | 94.8% |
| 2wiyA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.64 | 54.0 | 3.42e-01 | 93.2% | 41.6% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.63 | 44.0 | 3.82e-01 | 75.7% | 48.6% |
| 1fpzC00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.62 | 51.0 | 3.82e-01 | 87.8% | 78.7% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.62 | 44.0 | 4.38e-01 | 95.9% | 71.4% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.62 | 43.0 | 4.39e-01 | 100.0% | 74.6% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 44.0 | 4.77e-01 | 77.0% | 100.0% |
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 53.0 | 4.30e-01 | 100.0% | 83.2% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.60 | 41.0 | 3.67e-01 | 71.6% | 55.2% |
| 1ug7A00 | 1.20.120.360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Axin interactor, dorsalization-associated protein, N-terminal domain | 0.59 | 47.0 | 3.95e-01 | 85.1% | 81.2% |
| 1oe8A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 46.0 | 3.87e-01 | 85.1% | 66.1% |
| 3ecsC01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.58 | 46.0 | 4.25e-01 | 90.5% | 82.0% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.58 | 40.0 | 3.83e-01 | 74.3% | 100.0% |
| 3rbtA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 43.0 | 3.73e-01 | 81.1% | 93.2% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.57 | 43.0 | 4.23e-01 | 90.5% | 75.9% |
| 2fmlB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 4.11e-01 | 74.3% | 100.0% |
| 2lbfB01 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 40.0 | 4.18e-01 | 82.4% | 95.7% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 42.0 | 3.91e-01 | 87.8% | 95.9% |
| 1guxB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 43.0 | 3.65e-01 | 97.3% | 98.6% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 43.0 | 4.22e-01 | 89.2% | 96.2% |
| 4dwnA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.50 | 33.0 | 3.11e-01 | 71.6% | 51.5% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4420382 | 5051.1.1.18 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Spore_permease | 0.77 | 69.0 | 4.41e-01 | 98.6% | 71.7% |
| 4934319 | 101.1.2.947 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27234 | 0.76 | 60.0 | 6.51e-01 | 85.1% | 98.4% |
| 3967832 | 5051.1.1.9 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Transp_cyt_pur | 0.74 | 65.0 | 4.01e-01 | 100.0% | 69.8% |
| 5014572 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.72 | 65.0 | 4.97e-01 | 100.0% | 86.7% |
| 5053286 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.69 | 57.0 | 3.72e-01 | 90.5% | 23.3% |
| 5060140 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.69 | 40.0 | 4.32e-01 | 85.1% | 66.2% |
| 3576763 | 101.1.1.332 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Nucleolin_bd | 0.69 | 49.0 | 5.19e-01 | 77.0% | 86.2% |
| 3430243 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.69 | 45.0 | 4.42e-01 | 82.4% | 62.5% |
| 3931563 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.69 | 47.0 | 5.14e-01 | 71.6% | 93.3% |
| 3583380 | 101.1.2.558 ↗ | alpha arrays › HTH › HTH › winged helix domain › CCD_aECM | 0.68 | 51.0 | 5.53e-01 | 79.7% | 100.0% |
| 3810002 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.68 | 55.0 | 4.92e-01 | 91.9% | 82.7% |
| 3481514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 54.0 | 4.42e-01 | 90.5% | 91.7% |
| 3789626 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 52.0 | 5.54e-01 | 86.5% | 96.9% |
| 3602612 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.66 | 40.0 | 4.10e-01 | 100.0% | 62.9% |
| 3991367 | 101.1.2.558 ↗ | alpha arrays › HTH › HTH › winged helix domain › CCD_aECM | 0.66 | 46.0 | 5.16e-01 | 82.4% | 100.0% |
| 3488077 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 47.0 | 4.31e-01 | 100.0% | 57.9% |
| 3424514 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.65 | 47.0 | 3.96e-01 | 75.7% | 67.5% |
| 4017461 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.65 | 57.0 | 5.16e-01 | 97.3% | 71.0% |
| 3714703 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.65 | 52.0 | 4.70e-01 | 100.0% | 64.0% |
| 3393405 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.64 | 53.0 | 4.90e-01 | 91.9% | 88.4% |
| 3928650 | 101.1.1.315 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CCD_aECM | 0.63 | 46.0 | 4.96e-01 | 81.1% | 95.0% |
| 3626359 | 101.1.1.315 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CCD_aECM | 0.59 | 40.0 | 4.55e-01 | 75.7% | 100.0% |
| 3925492 | 101.1.2.558 ↗ | alpha arrays › HTH › HTH › winged helix domain › CCD_aECM | 0.59 | 40.0 | 4.52e-01 | 71.6% | 100.0% |
| 4426344 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.59 | 44.0 | 4.61e-01 | 82.4% | 95.6% |
| 3214308 | 375.1.1.313 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CCD_aECM | 0.58 | 40.0 | 4.46e-01 | 74.3% | 100.0% |
| 4304744 | 109.4.1.206 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › YfiO | 0.57 | 48.0 | 4.05e-01 | 90.5% | 97.5% |
| 3964496 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.55 | 46.0 | 3.75e-01 | 100.0% | 68.1% |
| 3211345 | 101.1.2.558 ↗ | alpha arrays › HTH › HTH › winged helix domain › CCD_aECM | 0.55 | 40.0 | 4.28e-01 | 87.8% | 96.7% |
| 4026585 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 45.0 | 3.18e-01 | 91.9% | 30.7% |
| 3705329 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.54 | 49.0 | 4.44e-01 | 100.0% | 84.0% |
| 5070891 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.53 | 39.0 | 3.85e-01 | 95.9% | 73.8% |
| 3788338 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.52 | 42.0 | 4.23e-01 | 86.5% | 86.5% |
| 2418878 | 532.1.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Antibiotic binding domain of TipA-like multidrug resistance regulators › Antibiotic binding domain of TipA-like multidrug resistance regulators › TipAS | 0.51 | 42.0 | 3.65e-01 | 89.2% | 64.9% |
| 988025 | 616.1.1.5 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › T6SS_Tsi2-like | 0.51 | 42.0 | 4.23e-01 | 89.2% | 98.7% |
| 3264353 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.51 | 36.0 | 3.75e-01 | 75.7% | 86.2% |