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NC_041860.1__YP_009592394.1__FDG70_gp29__00029

Bact-Vir

NC_041860.1__YP_009592394.1__FDG70_gp29__00029

Identity

Accession:
NC_041860 ↗
Kingdom:
phage

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Likavirus› Streptomyces_phage_Danzina

TaxID: 1690427

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.69 54.0 5.40e-01 88.7% 90.9%
2incA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.60 42.0 2.47e-01 75.5% 9.6%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.59 43.0 2.52e-01 79.2% 10.1%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.56 39.0 3.56e-01 75.5% 94.8%
1ti2B01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 2.92e-01 71.7% 96.2%
4kdyB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 41.0 3.64e-01 90.6% 56.2%
5h7kA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 38.0 2.45e-01 73.6% 86.8%
2o34A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.53 40.0 2.57e-01 83.0% 17.3%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 36.0 3.02e-01 71.7% 76.8%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.53 36.0 3.00e-01 71.7% 56.2%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.52 35.0 3.52e-01 84.9% 66.7%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.52 39.0 2.56e-01 92.5% 52.3%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.52 41.0 3.77e-01 92.5% 94.7%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 42.0 3.33e-01 92.5% 59.5%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.51 41.0 3.10e-01 98.1% 82.0%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.26e-01 75.5% 97.3%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 40.0 3.34e-01 92.5% 65.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2035461 3380.1.1.1 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.72 58.0 5.72e-01 88.7% 89.3%
4945239 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 47.0 5.22e-01 71.7% 100.0%
4096542 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.69 49.0 4.86e-01 73.6% 74.5%
4342292 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.67 49.0 4.88e-01 77.4% 74.5%
3955895 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.67 49.0 4.91e-01 79.2% 80.0%
5053880 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 51.0 5.31e-01 88.7% 100.0%
4293536 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.66 49.0 4.99e-01 79.2% 82.0%
4421975 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.65 48.0 4.76e-01 79.2% 76.4%
4323754 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.65 47.0 4.86e-01 79.2% 85.4%
4114709 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.63 48.0 4.30e-01 81.1% 58.7%
3902875 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 40.0 3.81e-01 81.1% 52.3%
4886440 4232.1.2.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Mitoribosomal protein bL28m › Ribosomal_L28 0.62 47.0 4.33e-01 81.1% 62.9%
3813009 207.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.62 49.0 2.98e-01 88.7% 70.1%
3610304 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 49.0 4.52e-01 94.3% 89.3%
4119116 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.62 46.0 4.20e-01 81.1% 57.3%
4961820 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 46.0 4.48e-01 84.9% 91.7%
4492006 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.58 41.0 2.68e-01 77.4% 92.6%
4120496 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.58 46.0 4.27e-01 96.2% 77.3%
3926022 384.1.1.0 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.57 39.0 3.75e-01 77.4% 60.3%
3738675 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.71e-01 96.2% 86.1%
3167819 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.43e-01 75.5% 95.6%
3572060 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.56 46.0 3.60e-01 92.5% 54.2%
3750327 109.4.1.2865 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPOL_N 0.55 39.0 2.32e-01 75.5% 41.6%
3729519 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.55 44.0 3.57e-01 94.3% 78.3%
3927894 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 40.0 3.11e-01 83.0% 54.8%
3249147 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 37.0 2.56e-01 71.7% 86.8%
4030205 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 3.18e-01 84.9% 67.7%
3484326 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 41.0 2.63e-01 86.8% 37.3%
3411686 3136.1.1.1 ↗ extended segments › Gle2-binding sequence (GLEBS) of Nup98 › Gle2-binding sequence (GLEBS) of Nup98 › Gle2-binding sequence (GLEBS) of Nup98 › Nup98_GLEBS 0.53 33.0 3.20e-01 75.5% 55.0%
3726421 2004.1.1.47 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha 0.52 42.0 2.93e-01 100.0% 63.5%
3724091 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.51 42.0 2.80e-01 100.0% 72.5%