←Back to structures
NC_041866.1__YP_009593350.1__FDG83_gp21__00021
Bact-VirNC_041866.1__YP_009593350.1__FDG83_gp21__00021
Identity
- Accession:
- NC_041866 ↗
- Kingdom:
- phage
Quality
87.7
mean pLDDT
Taxonomy
TaxID: 1628721
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-91
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.89 | 65.0 | 7.22e-01 | 89.0% | 93.9% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.84 | 49.0 | 6.11e-01 | 79.3% | 96.0% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 52.0 | 6.24e-01 | 70.7% | 96.4% |
| 4a53A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 56.0 | 6.30e-01 | 80.5% | 93.5% |
| 3jb9H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 64.0 | 6.70e-01 | 85.4% | 98.7% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 52.0 | 5.61e-01 | 78.0% | 84.5% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 48.0 | 5.50e-01 | 78.0% | 91.5% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 58.0 | 6.00e-01 | 96.3% | 89.6% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 44.0 | 5.37e-01 | 76.8% | 96.2% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 51.0 | 5.46e-01 | 79.3% | 84.7% |
| 2hqvA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.68 | 56.0 | 4.37e-01 | 89.0% | 56.4% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 46.0 | 5.21e-01 | 70.7% | 93.5% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 47.0 | 5.26e-01 | 100.0% | 98.4% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.66 | 41.0 | 4.80e-01 | 72.0% | 92.9% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 50.0 | 5.33e-01 | 97.6% | 97.1% |
| 3oxhA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.64 | 37.0 | 3.11e-01 | 90.2% | 34.3% |
| 3oxhA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.64 | 37.0 | 3.35e-01 | 90.2% | 41.2% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 43.0 | 4.73e-01 | 70.7% | 97.0% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.63 | 56.0 | 5.16e-01 | 100.0% | 82.6% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.63 | 40.0 | 4.51e-01 | 100.0% | 88.1% |
| 2r6uA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.63 | 37.0 | 3.21e-01 | 90.2% | 38.5% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 44.0 | 4.70e-01 | 72.0% | 91.4% |
| 4krtB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 43.0 | 4.72e-01 | 73.2% | 100.0% |
| 1s1nA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 42.0 | 4.70e-01 | 73.2% | 96.7% |
| 3tw6D02 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.60 | 41.0 | 4.28e-01 | 90.2% | 76.3% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 44.0 | 4.81e-01 | 76.8% | 98.5% |
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 42.0 | 4.33e-01 | 75.6% | 79.5% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 40.0 | 4.41e-01 | 73.2% | 95.5% |
| 3htnB00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.56 | 50.0 | 4.23e-01 | 100.0% | 62.6% |
| 2hx0A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.56 | 49.0 | 4.27e-01 | 100.0% | 65.9% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 48.0 | 4.13e-01 | 96.3% | 87.9% |
| 2ec1A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 40.0 | 3.64e-01 | 78.0% | 78.8% |
| 3ab1A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 45.0 | 3.92e-01 | 89.0% | 90.5% |
| 1v3eA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.55 | 44.0 | 2.79e-01 | 87.8% | 27.6% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 42.0 | 3.83e-01 | 81.7% | 97.2% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.55 | 39.0 | 4.15e-01 | 75.6% | 87.1% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 34.0 | 3.94e-01 | 80.5% | 94.6% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.49e-01 | 81.7% | 84.5% |
| 3dorA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.50 | 43.0 | 3.93e-01 | 92.7% | 93.5% |
| 3uueA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 46.0 | 3.12e-01 | 100.0% | 89.6% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967986 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.85 | 67.0 | 6.84e-01 | 82.9% | 86.3% |
| 5053225 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 79.0 | 7.30e-01 | 100.0% | 89.0% |
| 5015352 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 61.0 | 6.12e-01 | 84.1% | 75.9% |
| 3968342 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.82 | 52.0 | 6.39e-01 | 70.7% | 100.0% |
| 4120629 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.81 | 62.0 | 6.45e-01 | 84.1% | 86.7% |
| 3289944 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.81 | 64.0 | 6.18e-01 | 84.1% | 75.6% |
| 4982354 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.79 | 58.0 | 6.41e-01 | 79.3% | 95.4% |
| 3942912 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.79 | 63.0 | 6.22e-01 | 84.1% | 82.4% |
| 5000741 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.78 | 57.0 | 6.31e-01 | 86.6% | 95.4% |
| 3978997 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.77 | 66.0 | 6.31e-01 | 96.3% | 80.0% |
| 3519122 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.77 | 67.0 | 6.52e-01 | 96.3% | 86.7% |
| 4083915 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.76 | 59.0 | 6.22e-01 | 84.1% | 89.3% |
| 4629735 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 52.0 | 5.82e-01 | 73.2% | 89.2% |
| 4044269 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.76 | 57.0 | 6.09e-01 | 96.3% | 91.4% |
| 4941620 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 51.0 | 5.83e-01 | 75.6% | 95.0% |
| 4300449 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.75 | 52.0 | 5.84e-01 | 74.4% | 90.8% |
| 4484893 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 50.0 | 5.50e-01 | 79.3% | 86.2% |
| 5058103 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 52.0 | 5.66e-01 | 79.3% | 86.8% |
| 4271974 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.75 | 53.0 | 5.90e-01 | 79.3% | 93.8% |
| 4138563 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 51.0 | 5.67e-01 | 78.0% | 89.2% |
| 3660964 | 4.1.1.6 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C | 0.74 | 53.0 | 4.97e-01 | 79.3% | 61.0% |
| 4870495 | 304.169.1.1 ↗ | a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL | 0.74 | 62.0 | 5.63e-01 | 96.3% | 68.5% |
| 4306285 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 53.0 | 5.76e-01 | 79.3% | 88.6% |
| 4888987 | 4.1.1.6 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C | 0.74 | 51.0 | 5.56e-01 | 74.4% | 85.5% |
| 3419491 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 51.0 | 5.83e-01 | 82.9% | 98.3% |
| 5022848 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 50.0 | 5.69e-01 | 73.2% | 95.0% |
| 4071824 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.73 | 58.0 | 6.08e-01 | 96.3% | 92.0% |
| 5075469 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.73 | 51.0 | 5.70e-01 | 79.3% | 92.3% |
| 3564972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 50.0 | 5.40e-01 | 84.1% | 84.3% |
| 4161673 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.72 | 50.0 | 4.95e-01 | 82.9% | 68.2% |
| 4593997 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 49.0 | 5.50e-01 | 73.2% | 89.2% |
| 3698762 | 4.1.1.6 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C | 0.72 | 52.0 | 4.80e-01 | 79.3% | 60.2% |
| 3597255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 50.0 | 4.96e-01 | 73.2% | 69.4% |
| 4945344 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 63.0 | 4.14e-01 | 96.3% | 35.7% |
| 4241924 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.71 | 49.0 | 4.75e-01 | 73.2% | 64.4% |
| 4971532 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 51.0 | 5.47e-01 | 79.3% | 87.1% |
| 5031165 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.70 | 51.0 | 5.45e-01 | 79.3% | 90.0% |
| 4943273 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 50.0 | 5.48e-01 | 79.3% | 93.8% |
| 4091771 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 48.0 | 5.48e-01 | 86.6% | 100.0% |
| 3928136 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 48.0 | 5.45e-01 | 82.9% | 100.0% |
| 3260945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 46.0 | 5.13e-01 | 70.7% | 95.0% |
| 5052257 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 45.0 | 5.12e-01 | 76.8% | 93.3% |
| 3344303 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.68 | 50.0 | 4.74e-01 | 79.3% | 99.0% |
| 2427475 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 45.0 | 4.84e-01 | 82.9% | 85.1% |
| 4350643 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.66 | 48.0 | 3.18e-01 | 76.8% | 29.7% |
| 3725153 | 4.1.1.286 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7072 | 0.66 | 53.0 | 5.36e-01 | 95.1% | 88.7% |
| 3679362 | 4.1.1.351 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 | 0.65 | 44.0 | 4.43e-01 | 70.7% | 100.0% |
| 1214266 | 211.1.1.11 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_6 | 0.65 | 37.0 | 4.26e-01 | 90.2% | 75.8% |
| 403788 | 4.1.1.100 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_11 | 0.64 | 46.0 | 5.16e-01 | 87.8% | 100.0% |
| 3880508 | 4.1.1.129 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_5 | 0.64 | 47.0 | 4.54e-01 | 100.0% | 68.4% |
| 3918252 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 32.0 | 4.16e-01 | 86.6% | 97.7% |
| 3396910 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.58 | 46.0 | 3.58e-01 | 85.4% | 96.1% |
| 3704471 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 48.0 | 4.70e-01 | 90.2% | 96.7% |
| 3656952 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 39.0 | 3.50e-01 | 72.0% | 69.6% |
| 3506274 | 331.2.1.7 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM1_C_vert_fung | 0.56 | 47.0 | 4.18e-01 | 97.6% | 82.4% |
| 4030565 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 43.0 | 2.89e-01 | 85.4% | 22.7% |
| 3737927 | 220.1.1.294 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 | 0.55 | 46.0 | 4.11e-01 | 95.1% | 66.4% |
| 3709493 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 38.0 | 3.26e-01 | 73.2% | 76.2% |
| 3415836 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.53 | 40.0 | 3.69e-01 | 79.3% | 67.6% |
| 3863406 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.52 | 32.0 | 3.31e-01 | 78.0% | 65.3% |