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NC_041866.1__YP_009593366.1__FDG83_gp37__00037
Bact-VirNC_041866.1__YP_009593366.1__FDG83_gp37__00037
Identity
- Accession:
- NC_041866 ↗
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Taxonomy
TaxID: 1628721
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-93
Domain cluster:
rep: KY006853.1__APZ81777.1__vBEliSR6L_12__00012__D1-82
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.80 | 52.0 | 4.34e-01 | 84.3% | 41.8% |
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.79 | 52.0 | 4.61e-01 | 80.9% | 48.8% |
| 2cszA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.78 | 47.0 | 5.10e-01 | 84.3% | 71.1% |
| 1z2qA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.68 | 47.0 | 4.87e-01 | 83.1% | 76.2% |
| 3o70A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 38.0 | 4.60e-01 | 82.0% | 98.2% |
| 2ku3A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 38.0 | 4.34e-01 | 82.0% | 91.9% |
| 2d8yA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.59 | 41.0 | 4.45e-01 | 85.4% | 88.9% |
| 1rmdA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 41.0 | 4.21e-01 | 94.4% | 76.7% |
| 2co8A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.57 | 39.0 | 4.11e-01 | 86.5% | 78.0% |
| 5feyA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 36.0 | 3.79e-01 | 73.0% | 79.5% |
| 1ceeB00 | 3.90.810.10 | Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain | 0.51 | 24.0 | 2.84e-01 | 85.4% | 61.0% |
| 2darA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.50 | 33.0 | 3.61e-01 | 80.9% | 81.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5031996 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.88 | 54.0 | 6.78e-01 | 79.8% | 100.0% |
| 3938379 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.86 | 53.0 | 6.21e-01 | 80.9% | 86.2% |
| 4959872 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.86 | 39.0 | 5.79e-01 | 70.8% | 100.0% |
| 3237892 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.85 | 54.0 | 6.60e-01 | 76.4% | 96.7% |
| 3301384 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.85 | 52.0 | 6.47e-01 | 79.8% | 100.0% |
| 3705738 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.82 | 48.0 | 5.82e-01 | 76.4% | 88.3% |
| 3745376 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.81 | 53.0 | 5.73e-01 | 80.9% | 78.7% |
| 3518169 | 376.1.3.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF | 0.81 | 53.0 | 5.55e-01 | 84.3% | 73.8% |
| 4466003 | 376.1.3.44 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva | 0.80 | 57.0 | 6.63e-01 | 97.8% | 100.0% |
| 3562969 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.80 | 53.0 | 6.32e-01 | 84.3% | 100.0% |
| 3847015 | 192.7.1.79 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FYVE_2 | 0.80 | 52.0 | 6.30e-01 | 84.3% | 100.0% |
| 3597770 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.80 | 43.0 | 5.66e-01 | 87.6% | 96.0% |
| 3481685 | 376.1.3.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF | 0.79 | 45.0 | 5.80e-01 | 71.9% | 100.0% |
| 3739083 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.79 | 53.0 | 5.75e-01 | 82.0% | 81.3% |
| 3849360 | 376.1.3.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF | 0.78 | 52.0 | 5.65e-01 | 80.9% | 81.3% |
| 3701455 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.78 | 47.0 | 6.00e-01 | 76.4% | 100.0% |
| 3592068 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.76 | 49.0 | 6.01e-01 | 96.6% | 100.0% |
| 3234939 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.76 | 54.0 | 6.20e-01 | 78.7% | 100.0% |
| 3307915 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.76 | 54.0 | 6.23e-01 | 96.6% | 100.0% |
| 3235494 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.74 | 45.0 | 5.61e-01 | 74.2% | 100.0% |
| 3613326 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 41.0 | 5.37e-01 | 82.0% | 100.0% |
| 4946657 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 51.0 | 5.94e-01 | 91.0% | 100.0% |
| 4965229 | 377.1.1.133 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7569 | 0.73 | 41.0 | 5.32e-01 | 82.0% | 100.0% |
| 3466575 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 50.0 | 5.72e-01 | 82.0% | 96.9% |
| 4985634 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.72 | 49.0 | 5.74e-01 | 93.3% | 100.0% |
| 3473689 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.69 | 47.0 | 5.45e-01 | 76.4% | 95.4% |
| 3484196 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.69 | 49.0 | 5.53e-01 | 80.9% | 94.3% |
| 4951410 | 376.1.3.96 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF2180 | 0.69 | 51.0 | 5.76e-01 | 77.5% | 100.0% |
| 5021347 | 376.1.2.45 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › DUF2180 | 0.66 | 47.0 | 5.38e-01 | 73.0% | 100.0% |
| 5080685 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 48.0 | 5.38e-01 | 97.8% | 97.1% |
| 3593749 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 44.0 | 4.73e-01 | 83.1% | 82.7% |
| 3311001 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 37.0 | 3.57e-01 | 82.0% | 50.0% |
| 3630614 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.64 | 46.0 | 4.91e-01 | 80.9% | 85.0% |
| 4293536 | 4232.1.1.0 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 | 0.63 | 33.0 | 4.08e-01 | 78.7% | 86.0% |
| 3332206 | 376.1.3.31 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 | 0.59 | 45.0 | 4.21e-01 | 95.5% | 66.4% |
| 3293168 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.59 | 36.0 | 4.40e-01 | 75.3% | 100.0% |
| 3714795 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.57 | 45.0 | 4.54e-01 | 83.1% | 92.2% |
| 3310612 | 376.1.3.9 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 | 0.57 | 34.0 | 4.17e-01 | 83.1% | 98.2% |
| 3739407 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.56 | 34.0 | 3.60e-01 | 84.3% | 67.5% |
| 3549273 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.51 | 34.0 | 3.33e-01 | 79.8% | 60.0% |
| 3467699 | 376.1.3.56 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PF30811 | 0.50 | 38.0 | 3.62e-01 | 84.3% | 68.9% |